Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- AT3G59060
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT2G43010 | Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB. phytochrome interacting factor 4 (PIF4); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 6 (TAIR:AT3G59060.1); Has 4545 Blast hits to 4539 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 192; Plants - 3373; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink). phytochrome interacting factor 4 | 2 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL4G30410 | No description available. | scaffold_4 | + | View |
| AL5G29640 | No description available. | scaffold_5 | - | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR09G38970 | No description available. | A09 | - | View |
| BR05G03390 | No description available. | A05 | - | View |
| BR04G25650 | No description available. | A04 | + | View |
| BR03G21310 | No description available. | A03 | + | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_005G24440 | No description available. | scaffold_5 | - | View |
| CRU_004G24560 | No description available. | scaffold_4 | + | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM13G41670 | No description available. | Gm13 | + | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR06G22570 | No description available. | Chr06 | - | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD15G012860 | No description available. | 15 | - | View |
Oryza sativa ssp. japonica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OS09G33580 | BEE 1, putative, expressed | 9 | - | View |
| OS04G41229 | helix-loop-helix DNA-binding domain containing protein, expressed | 4 | + | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT14G14890 | No description available. | Chr14 | + | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC0001G16090 | No description available. | scaffold_1 | - | View |
| TC0004G18640 | No description available. | scaffold_4 | - | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP5G03920 | similar to AT3G59060|PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) | ch5-1 | + | View |
| TP4G25140 | similar to AT2G43010|PIF4 (phytochrome interacting factor 4) | ch4-6 | + | View |