Anchorpoints

Gene id
AT3G51060
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G66350SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid. Lateral root primordium (LRP) protein-related5-View
AT2G18120SHI-related sequence 4 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 4 (SRS4); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT4G36260.1); Has 174 Blast hits to 174 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2-View
AT4G36260Lateral root primordium (LRP) protein-related A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Encodes protein with a single zinc finger motif and a members of a small gene family of putative transcription factors in which the SHORT INTERNODES (SHI) gene is found. STY2/STY1 double mutants showed defective style, stigma as well as serrated leaves. STYLISH 2 (STY2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, style development, auxin homeostasis, negative regulation of gibberellic acid mediated signaling pathway, stigma development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 4 (TAIR:AT2G18120.1); Has 2502 Blast hits to 2002 proteins in 224 species: Archae - 2; Bacteria - 961; Metazoa - 458; Fungi - 79; Plants - 348; Viruses - 38; Other Eukaryotes - 616 (source: NCBI BLink).4-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G04500No description available.scaffold_7+View
AL8G34310No description available.scaffold_8+View
AL5G20700No description available.scaffold_5+View
AL3G39110No description available.scaffold_3-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR01G21730No description available.A01-View
BR07G12060No description available.A07-View
BR09G32760No description available.A09+View
BR03G55170No description available.A03-View
BR01G02270No description available.A01+View
BR07G02140No description available.A07+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G16420No description available.Bvchr6.sca002-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G20160No description available.Chr1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00014G03440No description available.CM3.5_scaffold00014-View
CM00007G09120No description available.CM3.5_scaffold00007-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00006G01910No description available.supercontig_6+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G03710No description available.scaffold_7+View
CRU_005G16330No description available.scaffold_5+View
CRU_008G27320No description available.scaffold_8+View
CRU_003G31020No description available.scaffold_3-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00017G00530No description available.scaffold00017+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G13080No description available.scaffold_6-View
EG0009G20080No description available.scaffold_9+View
EG0010G20660No description available.scaffold_10-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV1G14390tRNA-dihydrouridine synthase 1-like (probable)LG1-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM02G05830No description available.Gm02-View
GM16G24510No description available.Gm16-View
GM01G37590No description available.Gm01-View
GM11G07710No description available.Gm11+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR03G01180No description available.Chr03-View
GR02G12560No description available.Chr02+View
GR07G19810No description available.Chr07-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD02G012020No description available.2-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06512G00680No description available.scaffold06512+View
ME02994G00350No description available.scaffold02994+View
ME07520G02230No description available.scaffold07520+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G021130transcription factor C putativechr5+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G37970No description available.scaffold_1-View
PPE_007G18440No description available.scaffold_7-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G11820No description available.Chr05-View
PT07G01750No description available.Chr07-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G084680Short internodes 2 (AHRD V1 **-- B9MXK1_POPTR)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch02+View
SL03G033680Short internode related sequence 5 (AHRD V1 -*-- D2KC76_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch03+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G010050Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702chr02+View
ST02G027800Short internode related sequence 7 (AHRD V1 **-- D2KC77_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702chr02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G02360No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G30370similar to AT5G66350|SHI (SHORT INTERNODES)ch2-4-View
TP5G11150similar to AT3G51060|STY1 (STYLISH 1)ch5-1-View
TP3G31560similar to AT2G18120|SRS4 (SHI-RELATED SEQUENCE 4)ch3-6-View
TP7G34000similar to AT4G36260|STY2 (STYLISH 2)ch7-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G01250name=GSVIVG01018845001;chr4-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G15490No description available.5+View


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Description
Chromosome
Strand