Anchorpoints

Gene id
AT3G48780
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G23670Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum. long chain base2 (LCB2); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: photomorphogenesis, sphingosine biosynthetic process, sphingolipid biosynthetic process, pollen development; LOCATED IN: endoplasmic reticulum, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). long chain base25+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL5G17730No description available.scaffold_5+View
AL6G23470No description available.scaffold_6+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G19630No description available.A06-View
BR01G23350No description available.A01+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G13830No description available.Bvchr5.sca020+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL06G18730No description available.Chr6+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00089G00220No description available.CM3.5_scaffold00089-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_006G20760No description available.scaffold_6+View
CRU_005G14030No description available.scaffold_5+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G20960No description available.Chr08+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME01701G00570No description available.scaffold01701+View
ME09876G00670No description available.scaffold09876+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS11G31640serine palmitoyltransferase 2, putative, expressed Long chain base biosynthesis protein 2a11+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G15210No description available.scaffold_5-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT15G10380No description available.Chr15+View
PT12G10450No description available.Chr12+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G13970No description available.scaffold_3+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G13240similar to AT3G48780|SPT1 (SERINE PALMITOYLTRANSFERASE 1)ch5-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV17G08810name=GSVIVG01008621001;chr17-View


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Gene id
Species
Description
Chromosome
Strand