Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- AT3G47550
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT5G62460 | RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G47550.6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). RING/FYVE/PHD zinc finger superfamily protein | 5 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL5G16290 | No description available. | scaffold_5 | + | View |
| AL8G28860 | No description available. | scaffold_8 | + | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR02G38790 | No description available. | A02 | + | View |
| BR06G20230 | No description available. | A06 | - | View |
| BR06G28970 | No description available. | A06 | + | View |
| BR06G17790 | No description available. | A06 | - | View |
Citrullus lanatus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CL05G25250 | No description available. | Chr5 | + | View |
Cucumis melo
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CM00016G04200 | No description available. | CM3.5_scaffold00016 | - | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_005G12790 | No description available. | scaffold_5 | + | View |
| CRU_008G22510 | No description available. | scaffold_8 | + | View |
Citrus sinensis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CS00015G01700 | No description available. | scaffold00015 | - | View |
| CS00111G00440 | No description available. | scaffold00111 | + | View |
| CS00003G04320 | No description available. | scaffold00003 | - | View |
Eucalyptus grandis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| EG0002G04320 | No description available. | scaffold_2 | - | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV0G05530 | E3 ubiquitin-protein ligase MARCH3 (MARCH-III) (probable) | scf0513158 | + | View |
| FV5G13260 | E3 ubiquitin-protein ligase MARCH9 (MARCH-IX) (probable) | LG5 | + | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM06G20860 | No description available. | Gm06 | - | View |
| GM01G05800 | No description available. | Gm01 | + | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR08G19310 | No description available. | Chr08 | - | View |
| GR07G03750 | No description available. | Chr07 | - | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD09G003670 | No description available. | 9 | - | View |
| MD14G019210 | No description available. | 14 | - | View |
| MD17G004060 | No description available. | 17 | - | View |
| MD06G015710 | No description available. | 6 | - | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME08359G02330 | No description available. | scaffold08359 | + | View |
| ME12794G02190 | No description available. | scaffold12794 | - | View |
Prunus persica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PPE_001G28620 | No description available. | scaffold_1 | - | View |
| PPE_005G19850 | No description available. | scaffold_5 | - | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL03G116030 | E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- MARH3_MOUSE)%3B contains Interpro domain(s) IPR011016 Zinc finger%2C RING-CH-type | ch03 | + | View |
| SL06G069780 | E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA)%3B contains Interpro domain(s) IPR011016 Zinc finger%2C RING-CH-type | ch06 | + | View |
Solanum tuberosum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ST06G026780 | E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type | chr06 | + | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC0003G09030 | No description available. | scaffold_3 | - | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP5G14330 | similar to AT3G47550|zinc finger (C3HC4-type RING finger) family protein | ch5-1 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV17G03680 | name=GSVIVG01008001001; | chr17 | - | View |