Anchorpoints

Gene id
AT3G44750
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G22650Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation. histone deacetylase 2B (HD2B); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: DNA mediated transformation, negative regulation of transcription, polarity specification of adaxial/abaxial axis; LOCATED IN: cytosol, nucleolus, cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.1); Has 67941 Blast hits to 34482 proteins in 1815 species: Archae - 206; Bacteria - 15660; Metazoa - 22478; Fungi - 9360; Plants - 3234; Viruses - 784; Other Eukaryotes - 16219 (source: NCBI BLink). histone deacetylase 2B5+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G22330No description available.scaffold_6+View
AL5G12580No description available.scaffold_5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G11170No description available.A02+View
BR10G13580No description available.A10-View
BR03G09650No description available.A03+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G21930No description available.Chr2-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00047G03330No description available.CM3.5_scaffold00047+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_015G00010No description available.scaffold_15-View
CRU_005G09770No description available.scaffold_5+View
CRU_006G19800No description available.scaffold_6+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0010G03710No description available.scaffold_10-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM17G05340No description available.Gm17+View
GM11G19480No description available.Gm11+View
GM03G34850No description available.Gm03-View
GM12G09000Histone deacetylase HDT1Gm12-View
GM12G30600No description available.Gm12-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G08860No description available.Chr09-View
GR06G10930No description available.Chr06-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ3G043080No description available.chr3+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME05859G00250No description available.scaffold05859-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G084815histone deacetylase 2a C putativechr2+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G11610No description available.scaffold_6-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G18880No description available.Chr04+View
PT09G14940No description available.Chr09+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G066840Histone deacetylase-like protein (AHRD V1 *-*- Q3HVL4_SOLTU)ch11-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST11G024650Histone deacetylase-like protein-like (AHRD V1 ***- Q2XTD2_SOLTU)chr11-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0009G28740No description available.scaffold_9+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G22690similar to AT5G22650|HD2B (HISTONE DEACETYLASE 2B)ch6-6-View
TP5G16430similar to AT3G44750|HDA3 (HISTONE DEACETYLASE 3)ch5-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G08370name=GSVIVG01031404001;chr6-View


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Gene id
Species
Description
Chromosome
Strand