Anchorpoints
- Gene id
- AT3G29030
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G26770 | expansin A10 expansin A10 (EXPA10); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 52; Plants - 2112; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. | 1 | + | View |
AT1G69530 | expansin A1 Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2216 Blast hits to 2212 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). | 1 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL5G09080 | No description available. | scaffold_5 | + | View |
AL5G08530 | No description available. | scaffold_5 | - | View |
AL1G26840 | No description available. | scaffold_1 | - | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00010G05010 | No description available. | scaffold00010 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR07G26310 | No description available. | A07 | + | View |
BR09G04090 | No description available. | A09 | - | View |
BR09G30110 | No description available. | A09 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV6G02370 | No description available. | Bvchr6.sca028 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL02G03700 | No description available. | Chr2 | - | View |
CL09G18620 | No description available. | Chr9 | + | View |
CL06G16680 | No description available. | Chr6 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00051G00410 | No description available. | CM3.5_scaffold00051 | - | View |
CM00030G01030 | No description available. | CM3.5_scaffold00030 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00001G00460 | No description available. | supercontig_1 | - | View |
CP00014G00940 | No description available. | supercontig_14 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G23290 | No description available. | scaffold_1 | - | View |
CRU_005G07030 | No description available. | scaffold_5 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00015G01880 | No description available. | scaffold00015 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G12260 | No description available. | scaffold_9 | + | View |
EG0007G19230 | No description available. | scaffold_7 | + | View |
EG0002G26460 | No description available. | scaffold_2 | + | View |
EG0009G16370 | No description available. | scaffold_9 | - | View |
EG0002G04500 | No description available. | scaffold_2 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV0G05340 | Expansin-A1 (AtEXPA1), Precursor (putative) | scf0513158 | + | View |
FV5G13090 | Expansin-A1 (AtEXPA1), Precursor (putative) | LG5 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM20G04490 | No description available. | Gm20 | + | View |
GM06G20970 | No description available. | Gm06 | - | View |
GM18G49570 | No description available. | Gm18 | - | View |
GM09G37090 | No description available. | Gm09 | + | View |
GM01G06030 | No description available. | Gm01 | - | View |
GM02G12140 | No description available. | Gm02 | - | View |
GM19G02810 | No description available. | Gm19 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR06G01510 | No description available. | Chr06 | + | View |
GR01G23970 | No description available. | Chr01 | - | View |
GR08G19420 | No description available. | Chr08 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ1G037820 | No description available. | chr1 | - | View |
LJ2G017270 | No description available. | chr2 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD06G015810 | No description available. | 6 | - | View |
MD14G019300 | No description available. | 14 | - | View |
MD17G004270 | No description available. | 17 | - | View |
MD09G003810 | No description available. | 9 | - | View |
MD13G004560 | No description available. | 13 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME11581G01640 | No description available. | scaffold11581 | - | View |
ME12794G02260 | No description available. | scaffold12794 | - | View |
ME08359G02210 | No description available. | scaffold08359 | + | View |
ME03079G00050 | No description available. | scaffold03079 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT7G011060 | expansin A10 | chr7 | - | View |
MT6G012500 | pollen allergen protein | chr6 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_005G20000 | No description available. | scaffold_5 | - | View |
PPE_003G24480 | No description available. | scaffold_3 | + | View |
PPE_001G28820 | No description available. | scaffold_1 | - | View |
PPE_008G19110 | No description available. | scaffold_8 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT17G08530 | No description available. | Chr17 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29813G00610 | No description available. | 29813 | - | View |
RC30138G02270 | No description available. | 30138 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL03G115890 | Expansin (AHRD V1 ***- Q9FVG9_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminal | ch03 | + | View |
SL02G088100 | Expansin (AHRD V1 ***- Q9ZP31_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminal | ch02 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST02G034760 | Expansin (AHRD V1 ***- Q9ZP31_SOLLC); contains Interpro domain(s) IPR002963 Expansin | chr02 | + | View |
ST03G029370 | Expansin (AHRD V1 ***- Q9FVG9_SOLLC); contains Interpro domain(s) IPR002963 Expansin | chr03 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0007G18000 | No description available. | scaffold_7 | + | View |
TC0002G04760 | No description available. | scaffold_2 | - | View |
TC0002G34240 | No description available. | scaffold_2 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G22030 | similar to AT1G26770|ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10) | ch1-1 | - | View |
TP5G24650 | similar to AT1G69530|ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) | ch5-6 | + | View |
TP2G17660 | similar to AT3G29030|EXPA5 (EXPANSIN A5) | ch2-4 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV14G02400 | name=GSVIVG01011437001; | chr14 | - | View |
VV17G03550 | name=GSVIVG01007987001; | chr17 | - | View |