Anchorpoints

Gene id
AT3G29030
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G26770expansin A10 expansin A10 (EXPA10); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 52; Plants - 2112; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.1+View
AT1G69530expansin A1 Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2216 Blast hits to 2212 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).1+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL5G09080No description available.scaffold_5+View
AL5G08530No description available.scaffold_5-View
AL1G26840No description available.scaffold_1-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00010G05010No description available.scaffold00010-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR07G26310No description available.A07+View
BR09G04090No description available.A09-View
BR09G30110No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G02370No description available.Bvchr6.sca028+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G03700No description available.Chr2-View
CL09G18620No description available.Chr9+View
CL06G16680No description available.Chr6+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00051G00410No description available.CM3.5_scaffold00051-View
CM00030G01030No description available.CM3.5_scaffold00030-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00001G00460No description available.supercontig_1-View
CP00014G00940No description available.supercontig_14-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G23290No description available.scaffold_1-View
CRU_005G07030No description available.scaffold_5-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00015G01880No description available.scaffold00015-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G12260No description available.scaffold_9+View
EG0007G19230No description available.scaffold_7+View
EG0002G26460No description available.scaffold_2+View
EG0009G16370No description available.scaffold_9-View
EG0002G04500No description available.scaffold_2-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G05340Expansin-A1 (AtEXPA1), Precursor (putative)scf0513158+View
FV5G13090Expansin-A1 (AtEXPA1), Precursor (putative)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM20G04490No description available.Gm20+View
GM06G20970No description available.Gm06-View
GM18G49570No description available.Gm18-View
GM09G37090No description available.Gm09+View
GM01G06030No description available.Gm01-View
GM02G12140No description available.Gm02-View
GM19G02810No description available.Gm19-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR06G01510No description available.Chr06+View
GR01G23970No description available.Chr01-View
GR08G19420No description available.Chr08-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ1G037820No description available.chr1-View
LJ2G017270No description available.chr2-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD06G015810No description available.6-View
MD14G019300No description available.14-View
MD17G004270No description available.17-View
MD09G003810No description available.9-View
MD13G004560No description available.13+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME11581G01640No description available.scaffold11581-View
ME12794G02260No description available.scaffold12794-View
ME08359G02210No description available.scaffold08359+View
ME03079G00050No description available.scaffold03079-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G011060expansin A10chr7-View
MT6G012500pollen allergen proteinchr6-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G20000No description available.scaffold_5-View
PPE_003G24480No description available.scaffold_3+View
PPE_001G28820No description available.scaffold_1-View
PPE_008G19110No description available.scaffold_8+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT17G08530No description available.Chr17-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29813G00610No description available.29813-View
RC30138G02270No description available.30138+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G115890Expansin (AHRD V1 ***- Q9FVG9_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch03+View
SL02G088100Expansin (AHRD V1 ***- Q9ZP31_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch02-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G034760Expansin (AHRD V1 ***- Q9ZP31_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr02+View
ST03G029370Expansin (AHRD V1 ***- Q9FVG9_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr03+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0007G18000No description available.scaffold_7+View
TC0002G04760No description available.scaffold_2-View
TC0002G34240No description available.scaffold_2+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G22030similar to AT1G26770|ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)ch1-1-View
TP5G24650similar to AT1G69530|ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)ch5-6+View
TP2G17660similar to AT3G29030|EXPA5 (EXPANSIN A5)ch2-4-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G02400name=GSVIVG01011437001;chr14-View
VV17G03550name=GSVIVG01007987001;chr17-View


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Gene id
Species
Description
Chromosome
Strand