Anchorpoints
- Gene id
- AT3G19350
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G49760 | poly(A) binding protein 8 polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family. poly(A) binding protein 8 (PAB8); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1); Has 986469 Blast hits to 485112 proteins in 21501 species: Archae - 20784; Bacteria - 581960; Metazoa - 196391; Fungi - 29721; Plants - 62748; Viruses - 68352; Other Eukaryotes - 26513 (source: NCBI BLink). | 1 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL1G44100 | No description available. | scaffold_1 | + | View |
AL3G20880 | No description available. | scaffold_3 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR06G03520 | No description available. | A06 | + | View |
BR03G35890 | No description available. | A03 | + | View |
BR01G30590 | No description available. | A01 | - | View |
BR05G24280 | No description available. | A05 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL02G06200 | No description available. | Chr2 | - | View |
CL05G11410 | No description available. | Chr5 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00034G00670 | No description available. | CM3.5_scaffold00034 | - | View |
CM00038G01630 | No description available. | CM3.5_scaffold00038 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00055G01130 | No description available. | supercontig_55 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G08860 | No description available. | scaffold_9 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM06G04460 | No description available. | Gm06 | - | View |
GM14G09300 | No description available. | Gm14 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR09G21410 | No description available. | Chr09 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD15G002620 | No description available. | 15 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT3G102040 | polyadenylate-binding protein | chr3 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_008G14860 | No description available. | scaffold_8 | - | View |
PPE_001G43730 | No description available. | scaffold_1 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT14G02540 | No description available. | Chr14 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29801G00960 | No description available. | 29801 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL01G107870 | Poly(A) RNA binding protein (AHRD V1 **** B2CJ74_9HYPO)%3B contains Interpro domain(s) IPR006515 Polyadenylate binding protein%2C human types 1%2C 2%2C 3%2C 4 | ch01 | + | View |
SL12G088720 | Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE)%3B contains Interpro domain(s) IPR006515 Polyadenylate binding protein%2C human types 1%2C 2%2C 3%2C 4 | ch12 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST01G045020 | Poly(A) RNA binding protein (AHRD V1 **** B2CJ74_9HYPO); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 | chr01 | + | View |
ST12G026870 | Poly(A) RNA binding protein (AHRD V1 **** B2CJ74_9HYPO); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 | chr12 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0008G00340 | No description available. | scaffold_8 | + | View |
TC0002G09990 | No description available. | scaffold_2 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G36650 | similar to AT1G49760|PAB8 (POLY(A) BINDING PROTEIN 8) | ch1-2 | + | View |
TP3G17410 | similar to AT1G49760|PAB8 (POLY(A) BINDING PROTEIN 8) | ch3-1 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV07G05120 | name=GSVIVG01022079001; | chr7 | + | View |
VV03G06400 | name=GSVIVG01031709001; | chr3 | + | View |