Anchorpoints

Gene id
AT2G45140
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT3G60600vesicle associated protein (VAP); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 (TAIR:AT2G45140.1); Has 1108 Blast hits to 1074 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 446; Fungi - 141; Plants - 434; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. vesicle associated protein3+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL5G31330No description available.scaffold_5+View
AL4G33000No description available.scaffold_4+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G40130No description available.A09+View
BR04G26910No description available.A04+View
BR04G01360No description available.A04-View
BR07G16640No description available.A07+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV0G65030No description available.Bvchr1_un.sca002+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00049G01470No description available.supercontig_49+View
CP00029G01460No description available.supercontig_29-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G25950No description available.scaffold_5+View
CRU_004G26780No description available.scaffold_4+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00001G01320No description available.scaffold00001+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0004G20550No description available.scaffold_4+View
EG0005G03890No description available.scaffold_5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV7G11870Vesicle-associated membrane protein-associated protein C16G5.05c (VAMP-associated protein C16G5.05c) (probable)LG7+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM17G15010No description available.Gm17-View
GM11G03480No description available.Gm11-View
GM03G03800No description available.Gm03-View
GM01G41901No description available.Gm01+View
GM01G33220No description available.Gm01+View
GM05G04580No description available.Gm05-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G10620No description available.Chr08-View
GR03G17080No description available.Chr03-View
GR04G16380No description available.Chr04-View
GR04G04010No description available.Chr04+View
GR07G08900No description available.Chr07+View
GR08G23570No description available.Chr08+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME11581G00390No description available.scaffold11581-View
ME08265G04940No description available.scaffold08265+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G026540MSP (major sperm protein) domain proteinchr4-View
MT5G012420VAMP-associated proteinchr5-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS02G44300MSP domain containing protein, expressed2+View
OS04G46780MSP domain containing protein, expressed4+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_002G13570No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT14G05950No description available.Chr14+View
PT02G14400No description available.Chr02+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30174G00800No description available.30174+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G078690Vesicle-associated membrane protein-associated protein (AHRD V1 **-- Q1ANA7_WHEAT)%3B contains Interpro domain(s) IPR016763 Vesicle-associated membrane proteinch08+View
SL01G090910Vesicle-associated membrane protein-associated protein A (AHRD V1 ***- B6UGD8_MAIZE)%3B contains Interpro domain(s) IPR016763 Vesicle-associated membrane proteinch01+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G030060Vesicle-associated membrane protein-associated protein A (AHRD V1 ***- B6UGD8_MAIZE); contains Interpro domain(s) IPR016763 Vesicle-associated membrane proteinchr01+View
ST08G024490Vesicle-associated membrane protein-associated protein (AHRD V1 ***- Q1ANA7_WHEAT); contains Interpro domain(s) IPR016763 Vesicle-associated membrane proteinchr08+View
ST08G005340Vesicle-associated membrane protein-associated protein (AHRD V1 *-*- Q1ANA7_WHEAT); contains Interpro domain(s) IPR008962 PapD-likechr08+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G37680No description available.scaffold_1+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G02630similar to AT3G60600|VAP (VESICLE ASSOCIATED PROTEIN)ch5-1-View
TP4G27200similar to AT2G45140|PVA12 (PLANT VAP HOMOLOG 12)ch4-6+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV15G09430name=GSVIVG01027683001;chr15+View
VV02G00450name=GSVIVG01001317001;chr2-View


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Gene id
Species
Description
Chromosome
Strand