Anchorpoints
- Gene id
- AT2G43010
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G59060 | phytochrome interacting factor 3-like 6 Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B. phytochrome interacting factor 3-like 6 (PIL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: red, far-red light phototransduction, ethylene biosynthetic process, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 4 (TAIR:AT2G43010.1); Has 4555 Blast hits to 4547 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 974; Fungi - 129; Plants - 3421; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | 3 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL4G30410 | No description available. | scaffold_4 | + | View |
AL5G29640 | No description available. | scaffold_5 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR09G38970 | No description available. | A09 | - | View |
BR04G25650 | No description available. | A04 | + | View |
BR03G21310 | No description available. | A03 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV9G13320 | No description available. | Bvchr9.sca026 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_005G24440 | No description available. | scaffold_5 | - | View |
CRU_004G24560 | No description available. | scaffold_4 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0001G16990 | No description available. | scaffold_1 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR11G14460 | No description available. | Chr11 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT2G098310 | transcription factor bHLH122-like protein | chr2 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_003G16160 | No description available. | scaffold_3 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST09G030150 | Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding | chr09 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G16090 | No description available. | scaffold_1 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G03920 | similar to AT3G59060|PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) | ch5-1 | + | View |
TP3G21400 | similar to AT3G23690|basic helix-loop-helix (bHLH) family protein | ch3-2 | - | View |
TP4G25140 | similar to AT2G43010|PIF4 (phytochrome interacting factor 4) | ch4-6 | + | View |