Anchorpoints

Gene id
AT2G43010
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT3G59060phytochrome interacting factor 3-like 6 Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B. phytochrome interacting factor 3-like 6 (PIL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: red, far-red light phototransduction, ethylene biosynthetic process, circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 4 (TAIR:AT2G43010.1); Has 4555 Blast hits to 4547 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 974; Fungi - 129; Plants - 3421; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).3-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G30410No description available.scaffold_4+View
AL5G29640No description available.scaffold_5-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G38970No description available.A09-View
BR04G25650No description available.A04+View
BR03G21310No description available.A03+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV9G13320No description available.Bvchr9.sca026-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G24440No description available.scaffold_5-View
CRU_004G24560No description available.scaffold_4+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0001G16990No description available.scaffold_1+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR11G14460No description available.Chr11-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G098310transcription factor bHLH122-like proteinchr2+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G16160No description available.scaffold_3+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST09G030150Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-bindingchr09-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G16090No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G03920similar to AT3G59060|PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)ch5-1+View
TP3G21400similar to AT3G23690|basic helix-loop-helix (bHLH) family proteinch3-2-View
TP4G25140similar to AT2G43010|PIF4 (phytochrome interacting factor 4)ch4-6+View


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Gene id
Species
Description
Chromosome
Strand