Anchorpoints

Gene id
AT2G37640
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G28950Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A6 (EXPA6); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2139 Blast hits to 2136 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 24; Plants - 2081; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). expansin A62-View
AT5G02260expansin A9 member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin A9 (EXPA9); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: Barwin-like endoglucanases superfamily protein (TAIR:AT2G37640.1); Has 2170 Blast hits to 2166 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 2091; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).5+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G13460No description available.scaffold_4-View
AL4G23460No description available.scaffold_4-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR10G28670No description available.A10-View
BR05G07640No description available.A05+View
BR04G16930No description available.A04-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL03G01470No description available.Chr3+View
CL02G20290No description available.Chr2+View
CL04G08020No description available.Chr4+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00002G00700No description available.CM3.5_scaffold00002-View
CM00044G01630No description available.CM3.5_scaffold00044+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G09710No description available.scaffold_4-View
CRU_004G18970No description available.scaffold_4-View
CRU_006G01070No description available.scaffold_6+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0001G10310No description available.scaffold_1-View
EG0010G17700No description available.scaffold_10+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV7G26090Expansin-A4 (AtEXPA4), Precursor (putative)LG7+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM11G34040No description available.Gm11-View
GM11G14800No description available.Gm11+View
GM12G06730No description available.Gm12+View
GM13G41160No description available.Gm13-View
GM14G07360No description available.Gm14+View
GM07G15910No description available.Gm07-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR12G10440No description available.Chr12-View
GR01G11110No description available.Chr01-View
GR13G02220No description available.Chr13+View
GR11G26600No description available.Chr11-View
GR07G37630No description available.Chr07-View
GR02G25740No description available.Chr02+View
GR06G17240No description available.Chr06+View
GR09G09880No description available.Chr09+View
GR03G13100No description available.Chr03+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06916G00600No description available.scaffold06916+View
ME08265G02170No description available.scaffold08265-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G26410No description available.scaffold_6-View
PPE_002G22810No description available.scaffold_2-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G05710No description available.Chr08-View
PT10G20250No description available.Chr10+View
PT06G08610No description available.Chr06-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL09G010860Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch09-View
SL10G086520Expansin-1 (AHRD V1 ***- Q6RX69_PETHY)%3B contains Interpro domain(s) IPR002963 Expansinch10-View
SL10G084780Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007117 Pollen allergen/expansin%2C C-terminalch10-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST10G024150Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminalchr10+View
ST10G028230Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr10+View
ST09G009120Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr09+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0005G03690No description available.scaffold_5+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G20000similar to AT2G37640|EXP3ch4-6-View
TP4G11760similar to AT2G28950|ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)ch4-6-View
TP6G40190similar to AT5G02260|ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)ch6-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV13G05160name=GSVIVG01016525001;chr13-View
VV08G14490name=GSVIVG01034162001;chr8-View


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Gene id
Species
Description
Chromosome
Strand