Anchorpoints

Gene id
AT2G21660
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT4G39260cold, circadian rhythm, and RNA binding 1 cold, circadian rhythm, and RNA binding 1 (CCR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to zinc ion, response to salt stress, response to cold, circadian rhythm, innate immune response; LOCATED IN: nucleolus, cell wall, peroxisome, plasma membrane, chloroplast; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and rna binding 2 (TAIR:AT2G21660.2); Has 126 Blast hits to 126 proteins in 35 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 21; Plants - 62; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).4-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G00860No description available.scaffold_4-View
AL7G01210No description available.scaffold_7-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR04G12080No description available.A04-View
BR08G19960No description available.A08+View
BR01G00330No description available.A01-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV9G13470No description available.Bvchr9.sca026-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL11G14500No description available.Chr11+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00059G01090No description available.CM3.5_scaffold00059+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00062G01510No description available.supercontig_62+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G01160No description available.scaffold_4-View
CRU_004G00710No description available.scaffold_4-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G01910Glycine-rich RNA-binding protein 7 (similar to)LG2-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM11G12471No description available.Gm11-View
GM12G04701No description available.Gm12-View
GM06G01471No description available.Gm06-View
GM04G01421No description available.Gm04-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR13G03680No description available.Chr13-View
GR05G24390No description available.Chr05+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT09G11640No description available.Chr09+View
PT04G15530No description available.Chr04+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G051380Glycine-rich RNA-binding protein (AHRD V1 **** B2YKT9_TOBAC)%3B contains Interpro domain(s) IPR015465 RNA recognition motif%2C glycine rich proteinch10+View
SL01G109660Glycine-rich RNA-binding protein (AHRD V1 *-** B2YKT9_TOBAC)%3B contains Interpro domain(s) IPR015465 RNA recognition motif%2C glycine rich proteinch01+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G047060Glycine-rich RNA-binding protein (AHRD V1 *-** B2YKT9_TOBAC); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich proteinchr01+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G08100No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G36580similar to AT4G39260|GR-RBP8ch7-6+View
TP4G00820similar to AT2G21660|CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)ch4-1-View


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Gene id
Species
Description
Chromosome
Strand