Anchorpoints
- Gene id
- AT2G20750
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G20190 | member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin 11 expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). | 1 | - | View |
AT4G28250 | putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin B3 expansin B3 (EXPB3); INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin B1 (TAIR:AT2G20750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 4 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL3G41680 | No description available. | scaffold_3 | + | View |
AL7G13590 | No description available. | scaffold_7 | + | View |
AL1G21250 | No description available. | scaffold_1 | - | View |
AL7G00100 | No description available. | scaffold_7 | - | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00009G03910 | No description available. | scaffold00009 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR03G50210 | No description available. | A03 | - | View |
BR01G18460 | No description available. | A01 | - | View |
BR07G00110 | No description available. | A07 | - | View |
BR06G14570 | No description available. | A06 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL02G17740 | No description available. | Chr2 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00020G01570 | No description available. | CM3.5_scaffold00020 | - | View |
CM00034G03700 | No description available. | CM3.5_scaffold00034 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00034G01390 | No description available. | supercontig_34 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_007G11780 | No description available. | scaffold_7 | + | View |
CRU_003G33920 | No description available. | scaffold_3 | + | View |
CRU_001G18900 | No description available. | scaffold_1 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G05960 | No description available. | scaffold00002 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0001G14880 | No description available. | scaffold_1 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM06G44930 | No description available. | Gm06 | + | View |
GM13G37395 | No description available. | Gm13 | + | View |
GM12G12340 | No description available. | Gm12 | - | View |
GM12G33070 | No description available. | Gm12 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR05G20220 | No description available. | Chr05 | + | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ3G039260 | No description available. | chr3 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME11689G00460 | No description available. | scaffold11689 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT02G01790 | No description available. | Chr02 | + | View |
PT13G13430 | No description available. | Chr13 | + | View |
PT19G10190 | No description available. | Chr19 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29983G01130 | No description available. | 29983 | + | View |
RC30170G05960 | No description available. | 30170 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL10G008440 | Expansin B1 (AHRD V1 ***- C8CC40_RAPSA)%3B contains Interpro domain(s) IPR007117 Pollen allergen/expansin%2C C-terminal | ch10 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST10G009040 | Expansin B1 (AHRD V1 ***- C8CC40_RAPSA); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminal | chr10 | - | View |
ST07G019750 | Expansin B1 (AHRD V1 ***- C8CC40_RAPSA); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminal | chr07 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0002G17280 | No description available. | scaffold_2 | - | View |
TC0008G04780 | No description available. | scaffold_8 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP7G26210 | similar to AT4G28250|ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3) | ch7-5 | - | View |
TP1G17960 | similar to AT1G20190|ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) | ch1-1 | - | View |
TP3G34000 | similar to AT2G20750|ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) | ch3-6 | + | View |