Anchorpoints

Gene id
AT2G20750
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G20190member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin 11 expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).1-View
AT4G28250putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin B3 expansin B3 (EXPB3); INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin B1 (TAIR:AT2G20750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).4-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL3G41680No description available.scaffold_3+View
AL7G13590No description available.scaffold_7+View
AL1G21250No description available.scaffold_1-View
AL7G00100No description available.scaffold_7-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00009G03910No description available.scaffold00009+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G50210No description available.A03-View
BR01G18460No description available.A01-View
BR07G00110No description available.A07-View
BR06G14570No description available.A06-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G17740No description available.Chr2-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00020G01570No description available.CM3.5_scaffold00020-View
CM00034G03700No description available.CM3.5_scaffold00034+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00034G01390No description available.supercontig_34-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G11780No description available.scaffold_7+View
CRU_003G33920No description available.scaffold_3+View
CRU_001G18900No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G05960No description available.scaffold00002-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0001G14880No description available.scaffold_1-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM06G44930No description available.Gm06+View
GM13G37395No description available.Gm13+View
GM12G12340No description available.Gm12-View
GM12G33070No description available.Gm12-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G20220No description available.Chr05+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ3G039260No description available.chr3-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME11689G00460No description available.scaffold11689-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G01790No description available.Chr02+View
PT13G13430No description available.Chr13+View
PT19G10190No description available.Chr19+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29983G01130No description available.29983+View
RC30170G05960No description available.30170-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G008440Expansin B1 (AHRD V1 ***- C8CC40_RAPSA)%3B contains Interpro domain(s) IPR007117 Pollen allergen/expansin%2C C-terminalch10+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST10G009040Expansin B1 (AHRD V1 ***- C8CC40_RAPSA); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminalchr10-View
ST07G019750Expansin B1 (AHRD V1 ***- C8CC40_RAPSA); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminalchr07+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G17280No description available.scaffold_2-View
TC0008G04780No description available.scaffold_8-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G26210similar to AT4G28250|ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)ch7-5-View
TP1G17960similar to AT1G20190|ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)ch1-1-View
TP3G34000similar to AT2G20750|ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)ch3-6+View


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Gene id
Species
Description
Chromosome
Strand