Anchorpoints

Gene id
AT2G19760
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT4G29340profilin 4 (PRF4); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization, actin cytoskeleton organization; LOCATED IN: nucleus, actin cytoskeleton, cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Profilin/allergen (InterPro:IPR002097), Profilin, plant (InterPro:IPR005455); BEST Arabidopsis thaliana protein match is: profilin 5 (TAIR:AT2G19770.1); Has 899 Blast hits to 898 proteins in 239 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 117; Plants - 583; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). profilin 4 Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining.4+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL3G36410No description available.scaffold_3+View
AL7G12380No description available.scaffold_7-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR10G09830No description available.A10-View
BR09G10340No description available.A09-View
BR09G45460No description available.A09+View
BR03G50880No description available.A03+View
BR08G16360No description available.A08-View
BR01G07970No description available.A01-View
BR07G01100No description available.A07+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL11G16950No description available.Chr11-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00003G07290ProfilinCM3.5_scaffold00003-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00078G00310No description available.supercontig_78-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G10580No description available.scaffold_7-View
CRU_003G32720No description available.scaffold_3-View
CRU_008G16660No description available.scaffold_8-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0003G07940No description available.scaffold_3+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G35990Profilin (putative)scf0513146-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM08G03640No description available.Gm08+View
GM01G00920No description available.Gm01+View
GM05G35970No description available.Gm05-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR10G07840No description available.Chr10-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME00847G00300No description available.scaffold00847+View
ME09501G00280No description available.scaffold09501+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT8G102330profilinchr8+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_007G23710No description available.scaffold_7+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G008590Profilin (AHRD V1 ***- D6BRE6_9ROSI)%3B contains Interpro domain(s) IPR005455 Profilin%2C plantch12-View
SL12G044630Profilin (AHRD V1 ***- Q9SMC0_TOBAC)%3B contains Interpro domain(s) IPR005455 Profilin%2C plant Profilin-1ch12+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST12G009750Profilin (AHRD V1 ***- D6BRE6_9ROSI); contains Interpro domain(s) IPR005455 Profilin, plantchr12-View
ST12G022440Profilin (AHRD V1 ***- Q9SMC0_TOBAC); contains Interpro domain(s) IPR005455 Profilin, plantchr12+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G27220similar to AT4G29340|PRF4 (PROFILIN 4)ch7-5+View
TP6G18380similar to AT5G56600|PRF3 (PROFILIN 3)ch6-6-View
TP3G33090similar to AT2G19760|PRF1 (PROFILIN 1)ch3-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G07670name=GSVIVG01035320001;chr4-View
VV11G04280name=GSVIVG01015280001;chr11+View


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Gene id
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Description
Chromosome
Strand