Anchorpoints
- Gene id
- AT1G77080
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT5G20240 | Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities. K-box region and MADS-box transcription factor family protein PISTILLATA (PI); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G23260.1); Has 7000 Blast hits to 6999 proteins in 918 species: Archae - 0; Bacteria - 3; Metazoa - 620; Fungi - 300; Plants - 6000; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | 5 | + | View |
AT1G71692 | Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots. AGAMOUS-like 12 AGAMOUS-like 12 (AGL12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, root development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G58780.1); Has 6551 Blast hits to 6549 proteins in 840 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 300; Plants - 5564; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | 1 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL7G17600 | No description available. | scaffold_7 | + | View |
AL2G26040 | No description available. | scaffold_2 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR03G47970 | No description available. | A03 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00014G04570 | No description available. | CM3.5_scaffold00014 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00021G00120 | No description available. | supercontig_21 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_006G18120 | No description available. | scaffold_6 | + | View |
CRU_002G22610 | No description available. | scaffold_2 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00059G00240 | No description available. | scaffold00059 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0006G17400 | No description available. | scaffold_6 | + | View |
EG0010G25620 | No description available. | scaffold_10 | + | View |
EG0009G04460 | No description available. | scaffold_9 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV1G26560 | MADS-box protein JOINTLESS (similar to) | LG1 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM06G10020 | No description available. | Gm06 | - | View |
GM08G38386 | No description available. | Gm08 | + | View |
GM04G10015 | No description available. | Gm04 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR05G09300 | No description available. | Chr05 | + | View |
GR12G04260 | No description available. | Chr12 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ5G033990 | No description available. | chr5 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD08G018580 | No description available. | 8 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT5G066180 | MADS-box transcription factor | chr5 | + | View |
MT4G093970 | MADS-box transcription factor | chr4 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_008G07650 | No description available. | scaffold_8 | - | View |
PPE_006G20600 | No description available. | scaffold_6 | + | View |
PPE_001G58370 | No description available. | scaffold_1 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT07G12000 | No description available. | Chr07 | - | View |
PT05G15530 | No description available. | Chr05 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL12G087820 | MADS-box transcription factor 13 (AHRD V1 **** D3U2H3_ORYSA)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box | ch12 | - | View |
SL06G059970 | MADS box transcription factor (AHRD V1 ***- A7LK41_POPDE)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box | ch06 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST04G029370 | MADS box transcription factor (AHRD V1 **-- Q6RF31_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box | chr04 | - | View |
ST04G012420 | MADS-box transcription factor 31 (AHRD V1 ***- B6TW19_MAIZE); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box | chr04 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0002G12440 | No description available. | scaffold_2 | - | View |
TC0008G06790 | No description available. | scaffold_8 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP7G22540 | similar to AT4G24540|AGL24 (AGAMOUS-LIKE 24) | ch7-4 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G04560 | name=GSVIVG01009171001; | chr18 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM10G05670 | LOC542326;LOC542326 | 10 | + | View |
ZM02G11150 | No description available. | 2 | - | View |
ZM03G01750 | No description available. | 3 | - | View |