Anchorpoints

Gene id
AT1G77080
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G20240Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities. K-box region and MADS-box transcription factor family protein PISTILLATA (PI); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G23260.1); Has 7000 Blast hits to 6999 proteins in 918 species: Archae - 0; Bacteria - 3; Metazoa - 620; Fungi - 300; Plants - 6000; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).5+View
AT1G71692Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots. AGAMOUS-like 12 AGAMOUS-like 12 (AGL12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, root development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G58780.1); Has 6551 Blast hits to 6549 proteins in 840 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 300; Plants - 5564; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).1-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G17600No description available.scaffold_7+View
AL2G26040No description available.scaffold_2+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G47970No description available.A03-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00014G04570No description available.CM3.5_scaffold00014-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00021G00120No description available.supercontig_21+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_006G18120No description available.scaffold_6+View
CRU_002G22610No description available.scaffold_2+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00059G00240No description available.scaffold00059-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G17400No description available.scaffold_6+View
EG0010G25620No description available.scaffold_10+View
EG0009G04460No description available.scaffold_9-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV1G26560MADS-box protein JOINTLESS (similar to)LG1+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM06G10020No description available.Gm06-View
GM08G38386No description available.Gm08+View
GM04G10015No description available.Gm04-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G09300No description available.Chr05+View
GR12G04260No description available.Chr12-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ5G033990No description available.chr5-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD08G018580No description available.8+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G066180MADS-box transcription factorchr5+View
MT4G093970MADS-box transcription factorchr4-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G07650No description available.scaffold_8-View
PPE_006G20600No description available.scaffold_6+View
PPE_001G58370No description available.scaffold_1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT07G12000No description available.Chr07-View
PT05G15530No description available.Chr05+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G087820MADS-box transcription factor 13 (AHRD V1 **** D3U2H3_ORYSA)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-boxch12-View
SL06G059970MADS box transcription factor (AHRD V1 ***- A7LK41_POPDE)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-boxch06-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G029370MADS box transcription factor (AHRD V1 **-- Q6RF31_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-boxchr04-View
ST04G012420MADS-box transcription factor 31 (AHRD V1 ***- B6TW19_MAIZE); contains Interpro domain(s) IPR002100 Transcription factor, MADS-boxchr04+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G12440No description available.scaffold_2-View
TC0008G06790No description available.scaffold_8+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G22540similar to AT4G24540|AGL24 (AGAMOUS-LIKE 24)ch7-4-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G04560name=GSVIVG01009171001;chr18+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM10G05670LOC542326;LOC54232610+View
ZM02G11150No description available.2-View
ZM03G01750No description available.3-View


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Gene id
Species
Description
Chromosome
Strand