Anchorpoints

Gene id
AT1G75950
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G20140SKP1-like 4 (SK4); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 3 (TAIR:AT2G25700.1); Has 1439 Blast hits to 1435 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 560; Fungi - 180; Plants - 528; Viruses - 11; Other Eukaryotes - 160 (source: NCBI BLink). SKP1-like 41+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G21210No description available.scaffold_1+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR07G31170No description available.A07+View
BR07G10550No description available.A07-View
BR07G19760No description available.A07-View
BR02G23500No description available.A02+View
BR06G14520No description available.A06+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV9G02110No description available.Bvchr9.sca025-View
BV0G28510No description available.Bvchr1_un.sca004+View
BV6G08940No description available.Bvchr6.sca003-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL08G13860No description available.Chr8+View
CL02G04180No description available.Chr2-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00014G07160No description available.CM3.5_scaffold00014+View
CM00019G02570No description available.CM3.5_scaffold00019-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00026G02900No description available.supercontig_26-View
CP00020G00920No description available.supercontig_20+View
CP00006G02890No description available.supercontig_6+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G21570No description available.scaffold_2+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00065G00210No description available.scaffold00065+View
CS00023G00760No description available.scaffold00023+View
CS00002G05880No description available.scaffold00002+View
CS00017G01590No description available.scaffold00017+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G13610No description available.scaffold_6+View
EG0009G11610No description available.scaffold_9+View
EG0010G21480No description available.scaffold_10+View
EG0009G19520No description available.scaffold_9-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G07570SKP1-like protein 4 (AtSK4) (putative)LG2-View
FV2G38130SKP1-like protein 1B (similar to)LG2-View
FV0G33700SKP1-like protein 1B (putative)scf0513146+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM01G36850No description available.Gm01-View
GM11G08440No description available.Gm11+View
GM02G05120No description available.Gm02-View
GM16G23230No description available.Gm16-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G03640No description available.Chr08+View
GR02G19870No description available.Chr02+View
GR03G00730No description available.Chr03-View
GR10G00210No description available.Chr10-View
GR02G00260No description available.Chr02-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ2G029060No description available.chr2-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD15G017810No description available.15-View
MD02G010990No description available.2-View
MD05G019760No description available.5-View
MD08G007570No description available.8-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06512G01450No description available.scaffold06512+View
ME07012G00250No description available.scaffold07012-View
ME07520G02920No description available.scaffold07520+View
ME02943G00470No description available.scaffold02943+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G022710SCF ubiquitin ligase C SKP1 componentchr5+View
MT1G112570SKP1 family C dimerization domain proteinchr1+View
MT5G096950SCF ubiquitin ligase C SKP1 componentchr5+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS10G30200SKP1-like protein 1B, putative, expressed10+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_007G19330No description available.scaffold_7+View
PPE_008G18340No description available.scaffold_8+View
PPE_001G36980No description available.scaffold_1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G01870No description available.Chr02-View
PT04G17590No description available.Chr04+View
PT05G10990No description available.Chr05-View
PT09G13580No description available.Chr09+View
PT05G24310No description available.Chr05+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G05840No description available.30170+View
RC28962G00160No description available.28962-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G111640Skp1 (AHRD V1 ***- Q49HP3_CAPAN)%3B contains Interpro domain(s) IPR016897 E3 ubiquitin ligase%2C SCF complex%2C Skp subunitch01+View
SL10G055570SKP1-like protein (AHRD V1 ***- O82463_NICCL)%3B contains Interpro domain(s) IPR001232 SKP1 componentch10+View
SL03G093190SKP1-like 2 (AHRD V1 ***- D3TVT1_PETHY)%3B contains Interpro domain(s) IPR001232 SKP1 componentch03+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G049050S-phase kinase-associated protein 1A (AHRD V1 **-- B0WSC9_CULQU); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunitchr01+View
ST10G019190SKP1-like protein 3 (AHRD V1 ***- B6CNU8_PETHY); contains Interpro domain(s) IPR001232 SKP1 componentchr10-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G01300No description available.scaffold_1-View
TC0002G05670No description available.scaffold_2+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G31070similar to AT1G75950|SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)ch5-7+View
TP1G17920similar to AT2G25700|ASK3 (ARABIDOPSIS SKP1-LIKE 3)ch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G11110name=GSVIVG01009967001;chr18+View
VV03G04660name=GSVIVG01024017001;chr3-View


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Gene id
Species
Description
Chromosome
Strand