Anchorpoints
- Gene id
- AT1G75950
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G20140 | SKP1-like 4 (SK4); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 3 (TAIR:AT2G25700.1); Has 1439 Blast hits to 1435 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 560; Fungi - 180; Plants - 528; Viruses - 11; Other Eukaryotes - 160 (source: NCBI BLink). SKP1-like 4 | 1 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL1G21210 | No description available. | scaffold_1 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR07G31170 | No description available. | A07 | + | View |
BR07G10550 | No description available. | A07 | - | View |
BR07G19760 | No description available. | A07 | - | View |
BR02G23500 | No description available. | A02 | + | View |
BR06G14520 | No description available. | A06 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV9G02110 | No description available. | Bvchr9.sca025 | - | View |
BV0G28510 | No description available. | Bvchr1_un.sca004 | + | View |
BV6G08940 | No description available. | Bvchr6.sca003 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL08G13860 | No description available. | Chr8 | + | View |
CL02G04180 | No description available. | Chr2 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00014G07160 | No description available. | CM3.5_scaffold00014 | + | View |
CM00019G02570 | No description available. | CM3.5_scaffold00019 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00026G02900 | No description available. | supercontig_26 | - | View |
CP00020G00920 | No description available. | supercontig_20 | + | View |
CP00006G02890 | No description available. | supercontig_6 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_002G21570 | No description available. | scaffold_2 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00065G00210 | No description available. | scaffold00065 | + | View |
CS00023G00760 | No description available. | scaffold00023 | + | View |
CS00002G05880 | No description available. | scaffold00002 | + | View |
CS00017G01590 | No description available. | scaffold00017 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0006G13610 | No description available. | scaffold_6 | + | View |
EG0009G11610 | No description available. | scaffold_9 | + | View |
EG0010G21480 | No description available. | scaffold_10 | + | View |
EG0009G19520 | No description available. | scaffold_9 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV2G07570 | SKP1-like protein 4 (AtSK4) (putative) | LG2 | - | View |
FV2G38130 | SKP1-like protein 1B (similar to) | LG2 | - | View |
FV0G33700 | SKP1-like protein 1B (putative) | scf0513146 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM01G36850 | No description available. | Gm01 | - | View |
GM11G08440 | No description available. | Gm11 | + | View |
GM02G05120 | No description available. | Gm02 | - | View |
GM16G23230 | No description available. | Gm16 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR08G03640 | No description available. | Chr08 | + | View |
GR02G19870 | No description available. | Chr02 | + | View |
GR03G00730 | No description available. | Chr03 | - | View |
GR10G00210 | No description available. | Chr10 | - | View |
GR02G00260 | No description available. | Chr02 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ2G029060 | No description available. | chr2 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD15G017810 | No description available. | 15 | - | View |
MD02G010990 | No description available. | 2 | - | View |
MD05G019760 | No description available. | 5 | - | View |
MD08G007570 | No description available. | 8 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME06512G01450 | No description available. | scaffold06512 | + | View |
ME07012G00250 | No description available. | scaffold07012 | - | View |
ME07520G02920 | No description available. | scaffold07520 | + | View |
ME02943G00470 | No description available. | scaffold02943 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT5G022710 | SCF ubiquitin ligase C SKP1 component | chr5 | + | View |
MT1G112570 | SKP1 family C dimerization domain protein | chr1 | + | View |
MT5G096950 | SCF ubiquitin ligase C SKP1 component | chr5 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS10G30200 | SKP1-like protein 1B, putative, expressed | 10 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_007G19330 | No description available. | scaffold_7 | + | View |
PPE_008G18340 | No description available. | scaffold_8 | + | View |
PPE_001G36980 | No description available. | scaffold_1 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT02G01870 | No description available. | Chr02 | - | View |
PT04G17590 | No description available. | Chr04 | + | View |
PT05G10990 | No description available. | Chr05 | - | View |
PT09G13580 | No description available. | Chr09 | + | View |
PT05G24310 | No description available. | Chr05 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30170G05840 | No description available. | 30170 | + | View |
RC28962G00160 | No description available. | 28962 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL01G111640 | Skp1 (AHRD V1 ***- Q49HP3_CAPAN)%3B contains Interpro domain(s) IPR016897 E3 ubiquitin ligase%2C SCF complex%2C Skp subunit | ch01 | + | View |
SL10G055570 | SKP1-like protein (AHRD V1 ***- O82463_NICCL)%3B contains Interpro domain(s) IPR001232 SKP1 component | ch10 | + | View |
SL03G093190 | SKP1-like 2 (AHRD V1 ***- D3TVT1_PETHY)%3B contains Interpro domain(s) IPR001232 SKP1 component | ch03 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST01G049050 | S-phase kinase-associated protein 1A (AHRD V1 **-- B0WSC9_CULQU); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit | chr01 | + | View |
ST10G019190 | SKP1-like protein 3 (AHRD V1 ***- B6CNU8_PETHY); contains Interpro domain(s) IPR001232 SKP1 component | chr10 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G01300 | No description available. | scaffold_1 | - | View |
TC0002G05670 | No description available. | scaffold_2 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G31070 | similar to AT1G75950|SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) | ch5-7 | + | View |
TP1G17920 | similar to AT2G25700|ASK3 (ARABIDOPSIS SKP1-LIKE 3) | ch1-1 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G11110 | name=GSVIVG01009967001; | chr18 | + | View |
VV03G04660 | name=GSVIVG01024017001; | chr3 | - | View |