Anchorpoints

Gene id
AT1G26500
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT3G25210Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).3+View
AT3G29290embryo defective 2076 (emb2076); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 34767 Blast hits to 12132 proteins in 265 species: Archae - 2; Bacteria - 30; Metazoa - 249; Fungi - 365; Plants - 32849; Viruses - 0; Other Eukaryotes - 1272 (source: NCBI BLink). Pentatricopeptide repeat (PPR) superfamily protein3+View
AT2G15630Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1); Has 56384 Blast hits to 14280 proteins in 305 species: Archae - 4; Bacteria - 41; Metazoa - 1079; Fungi - 1056; Plants - 52130; Viruses - 0; Other Eukaryotes - 2074 (source: NCBI BLink). Pentatricopeptide repeat (PPR) superfamily protein2+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G27140No description available.scaffold_1-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G29850No description available.A09+View
BR09G48750No description available.A09+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL06G08000No description available.Chr6+View
CL08G10080No description available.Chr8-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G23560No description available.scaffold_1-View
CRU_005G07420No description available.scaffold_5+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0002G25940No description available.scaffold_2+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G04320Putative pentatricopeptide repeat-containing protein At1g26500scf0513158+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM02G12910No description available.Gm02-View
GM01G07040No description available.Gm01-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G044120PPR containing plant-like proteinchr5-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G29700No description available.scaffold_1-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G005030Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KQP9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeatchr04+View
ST02G034280Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeatchr02-View
ST05G005770Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KX87_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeatchr05+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G09540No description available.scaffold_4+View
TC0002G33190No description available.scaffold_2+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G17890similar to AT3G29290|emb2076 (embryo defective 2076)ch2-4+View
TP1G22250similar to AT1G26500|pentatricopeptide (PPR) repeat-containing proteinch1-1-View
TP1G12140similar to AT1G13800|pentatricopeptide (PPR) repeat-containing proteinch1-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV01G10420name=GSVIVG01012216001;chr1-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G26390No description available.7-View


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Gene id
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Description
Chromosome
Strand