Anchorpoints

Gene id
AT1G23460
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G70500Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G23460.1); Has 4030 Blast hits to 4010 proteins in 486 species: Archae - 4; Bacteria - 1128; Metazoa - 14; Fungi - 1268; Plants - 1483; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink). Pectin lyase-like superfamily protein1-View
AT5G14650Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1); Has 4562 Blast hits to 4542 proteins in 626 species: Archae - 6; Bacteria - 1470; Metazoa - 14; Fungi - 1443; Plants - 1493; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).5+View
AT1G60590Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G10640.1); Has 4525 Blast hits to 4468 proteins in 546 species: Archae - 6; Bacteria - 1298; Metazoa - 151; Fungi - 1295; Plants - 1596; Viruses - 3; Other Eukaryotes - 176 (source: NCBI BLink). Pectin lyase-like superfamily protein1-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G25280No description available.scaffold_1+View
AL6G14440No description available.scaffold_6+View
AL2G19010No description available.scaffold_2-View
AL2G05460No description available.scaffold_2+View
AL1G10650No description available.scaffold_1-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00096G00550No description available.scaffold00096+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR07G27050No description available.A07-View
BR07G08960No description available.A07-View
BR09G30950No description available.A09-View
BR09G14620No description available.A09+View
BR08G23930No description available.A08-View
BR06G07030No description available.A06-View
BR10G20140No description available.A10-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G09650No description available.Bvchr6.sca027+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL00G05430No description available.Chr0-View
CL05G26330No description available.Chr5-View
CL10G12200No description available.Chr10+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00011G09210No description available.CM3.5_scaffold00011-View
CM00016G02940No description available.CM3.5_scaffold00016-View
CM00014G00090No description available.CM3.5_scaffold00014-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00069G00630No description available.supercontig_69-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G04470No description available.scaffold_2+View
CRU_002G16230No description available.scaffold_2-View
CRU_006G12530No description available.scaffold_6+View
CRU_001G22100No description available.scaffold_1+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00028G00050No description available.scaffold00028+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G14890No description available.scaffold_9+View
EG0002G27380No description available.scaffold_2+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G39060Polygalacturonase At1g48100 (PG), Precursor (similar to)scf0513124-View
FV0G07030Probable polygalacturonase At1g80170 (PG), Precursorscf0513158-View
FV3G01470Exopolygalacturonase, Precursor (probable)LG3+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM19G00230No description available.Gm19-View
GM05G08730No description available.Gm05-View
GM08G39315No description available.Gm08+View
GM01G03400No description available.Gm01-View
GM02G04230No description available.Gm02+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G18130No description available.Chr05+View
GR01G26340No description available.Chr01-View
GR02G18550No description available.Chr02-View
GR12G17210No description available.Chr12-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ2G024490No description available.chr2-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G002080No description available.9+View
MD16G005370No description available.16-View
MD13G006730No description available.13-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03055G00080No description available.scaffold03055-View
ME03823G00150No description available.scaffold03823-View
ME04137G00080No description available.scaffold04137+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT8G065010polygalacturonase plant-like proteinchr8-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS01G36830polygalacturonase, putative, expressed1+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G26470No description available.scaffold_3-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT10G04210No description available.Chr10-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29917G00520No description available.29917+View
RC29631G00190No description available.29631+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST05G013760Polygalacturonase (AHRD V1 ***- E5GBI6_CUCME); contains Interpro domain(s) IPR012334 Pectin lyase foldchr05-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G01200No description available.scaffold_4-View
TC0002G25310No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G20890similar to AT1G23460|polygalacturonasech1-1+View
TP6G29390similar to AT5G14650|polygalacturonase, putative / pectinase, putativech6-6-View
TP5G25590similar to AT1G70500|polygalacturonase, putative / pectinase, putativech5-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G11410name=GSVIVG01032447001;chr14+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM03G36720polygalacturonase3-View


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Gene id
Species
Description
Chromosome
Strand