Anchorpoints
- Gene id
- AT1G23460
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G70500 | Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G23460.1); Has 4030 Blast hits to 4010 proteins in 486 species: Archae - 4; Bacteria - 1128; Metazoa - 14; Fungi - 1268; Plants - 1483; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink). Pectin lyase-like superfamily protein | 1 | - | View |
AT5G14650 | Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1); Has 4562 Blast hits to 4542 proteins in 626 species: Archae - 6; Bacteria - 1470; Metazoa - 14; Fungi - 1443; Plants - 1493; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). | 5 | + | View |
AT1G60590 | Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G10640.1); Has 4525 Blast hits to 4468 proteins in 546 species: Archae - 6; Bacteria - 1298; Metazoa - 151; Fungi - 1295; Plants - 1596; Viruses - 3; Other Eukaryotes - 176 (source: NCBI BLink). Pectin lyase-like superfamily protein | 1 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL1G25280 | No description available. | scaffold_1 | + | View |
AL6G14440 | No description available. | scaffold_6 | + | View |
AL2G19010 | No description available. | scaffold_2 | - | View |
AL2G05460 | No description available. | scaffold_2 | + | View |
AL1G10650 | No description available. | scaffold_1 | - | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00096G00550 | No description available. | scaffold00096 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR07G27050 | No description available. | A07 | - | View |
BR07G08960 | No description available. | A07 | - | View |
BR09G30950 | No description available. | A09 | - | View |
BR09G14620 | No description available. | A09 | + | View |
BR08G23930 | No description available. | A08 | - | View |
BR06G07030 | No description available. | A06 | - | View |
BR10G20140 | No description available. | A10 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV6G09650 | No description available. | Bvchr6.sca027 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL00G05430 | No description available. | Chr0 | - | View |
CL05G26330 | No description available. | Chr5 | - | View |
CL10G12200 | No description available. | Chr10 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00011G09210 | No description available. | CM3.5_scaffold00011 | - | View |
CM00016G02940 | No description available. | CM3.5_scaffold00016 | - | View |
CM00014G00090 | No description available. | CM3.5_scaffold00014 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00069G00630 | No description available. | supercontig_69 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_002G04470 | No description available. | scaffold_2 | + | View |
CRU_002G16230 | No description available. | scaffold_2 | - | View |
CRU_006G12530 | No description available. | scaffold_6 | + | View |
CRU_001G22100 | No description available. | scaffold_1 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00028G00050 | No description available. | scaffold00028 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G14890 | No description available. | scaffold_9 | + | View |
EG0002G27380 | No description available. | scaffold_2 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV0G39060 | Polygalacturonase At1g48100 (PG), Precursor (similar to) | scf0513124 | - | View |
FV0G07030 | Probable polygalacturonase At1g80170 (PG), Precursor | scf0513158 | - | View |
FV3G01470 | Exopolygalacturonase, Precursor (probable) | LG3 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM19G00230 | No description available. | Gm19 | - | View |
GM05G08730 | No description available. | Gm05 | - | View |
GM08G39315 | No description available. | Gm08 | + | View |
GM01G03400 | No description available. | Gm01 | - | View |
GM02G04230 | No description available. | Gm02 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR05G18130 | No description available. | Chr05 | + | View |
GR01G26340 | No description available. | Chr01 | - | View |
GR02G18550 | No description available. | Chr02 | - | View |
GR12G17210 | No description available. | Chr12 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ2G024490 | No description available. | chr2 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD09G002080 | No description available. | 9 | + | View |
MD16G005370 | No description available. | 16 | - | View |
MD13G006730 | No description available. | 13 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME03055G00080 | No description available. | scaffold03055 | - | View |
ME03823G00150 | No description available. | scaffold03823 | - | View |
ME04137G00080 | No description available. | scaffold04137 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT8G065010 | polygalacturonase plant-like protein | chr8 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS01G36830 | polygalacturonase, putative, expressed | 1 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_003G26470 | No description available. | scaffold_3 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT10G04210 | No description available. | Chr10 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29917G00520 | No description available. | 29917 | + | View |
RC29631G00190 | No description available. | 29631 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST05G013760 | Polygalacturonase (AHRD V1 ***- E5GBI6_CUCME); contains Interpro domain(s) IPR012334 Pectin lyase fold | chr05 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0004G01200 | No description available. | scaffold_4 | - | View |
TC0002G25310 | No description available. | scaffold_2 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G20890 | similar to AT1G23460|polygalacturonase | ch1-1 | + | View |
TP6G29390 | similar to AT5G14650|polygalacturonase, putative / pectinase, putative | ch6-6 | - | View |
TP5G25590 | similar to AT1G70500|polygalacturonase, putative / pectinase, putative | ch5-6 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV14G11410 | name=GSVIVG01032447001; | chr14 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM03G36720 | polygalacturonase | 3 | - | View |