Anchorpoints
- Gene id
- AT1G22760
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G71770 | Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro. poly(A)-binding protein 5 (PAB5); FUNCTIONS IN: RNA binding, poly(A) RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation, nuclear-transcribed mRNA poly(A) tail shortening; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 3 (TAIR:AT1G22760.1); Has 55698 Blast hits to 24293 proteins in 890 species: Archae - 24; Bacteria - 3417; Metazoa - 28886; Fungi - 7111; Plants - 10105; Viruses - 0; Other Eukaryotes - 6155 (source: NCBI BLink). poly(A)-binding protein 5 | 1 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL1G24370 | No description available. | scaffold_1 | + | View |
AL2G20470 | No description available. | scaffold_2 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR07G28000 | No description available. | A07 | - | View |
BR02G21060 | No description available. | A02 | - | View |
BR07G21560 | No description available. | A07 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL08G07050 | No description available. | Chr8 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_002G17460 | No description available. | scaffold_2 | - | View |
CRU_001G21360 | No description available. | scaffold_1 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G01480 | No description available. | scaffold00002 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV2G20780 | Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (putative) | LG2 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM16G27670 | No description available. | Gm16 | + | View |
GM20G31120 | No description available. | Gm20 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT02G06270 | No description available. | Chr02 | + | View |
PT05G19850 | No description available. | Chr05 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST04G026200 | Polyadenylate-binding protein 2 (AHRD V1 **** B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 | chr04 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G20270 | similar to AT1G22760|PAB3 (POLY(A) BINDING PROTEIN 3) | ch1-1 | + | View |
TP5G26790 | similar to AT1G71770|PAB5 (POLY(A)-BINDING PROTEIN 5) | ch5-6 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV00G22410 | name=GSVIVG01013699001; | chr18_random | + | View |