Anchorpoints

Gene id
AT1G22500
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT4G40070RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 9770 Blast hits to 9744 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 2524; Fungi - 782; Plants - 4953; Viruses - 74; Other Eukaryotes - 1437 (source: NCBI BLink).4+View
AT1G72200RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G22500.1); Has 9343 Blast hits to 9316 proteins in 282 species: Archae - 0; Bacteria - 4; Metazoa - 2295; Fungi - 806; Plants - 4899; Viruses - 51; Other Eukaryotes - 1288 (source: NCBI BLink).1-View
AT4G09100RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35000.1); Has 9246 Blast hits to 9221 proteins in 278 species: Archae - 0; Bacteria - 2; Metazoa - 2331; Fungi - 762; Plants - 4890; Viruses - 29; Other Eukaryotes - 1232 (source: NCBI BLink). RING/U-box superfamily protein4+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G07630No description available.scaffold_7-View
AL2G20980No description available.scaffold_2-View
AL1G37010No description available.scaffold_1+View
AL1G24100No description available.scaffold_1+View
AL6G31270No description available.scaffold_6+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G25210No description available.A03+View
BR07G09410No description available.A07-View
BR07G21280No description available.A07+View
BR02G21370No description available.A02-View
BR07G28390No description available.A07-View
BR09G25090No description available.A09-View
BR09G17020No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G10150No description available.Bvchr1.sca002+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G18810No description available.Chr1-View
CL08G11060No description available.Chr8+View
CL11G08550No description available.Chr11+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00014G04150No description available.CM3.5_scaffold00014+View
CM00007G07610No description available.CM3.5_scaffold00007-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00055G00570No description available.supercontig_55-View
CP00036G01860No description available.supercontig_36+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G21100No description available.scaffold_1+View
CRU_001G31370No description available.scaffold_1+View
CRU_002G17930No description available.scaffold_2-View
CRU_006G26720No description available.scaffold_6+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00004G02510No description available.scaffold00004+View
CS00059G00540No description available.scaffold00059-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G04350No description available.scaffold_9+View
EG0006G03310No description available.scaffold_6+View
EG0002G00370No description available.scaffold_2+View
EG0007G06460No description available.scaffold_7+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G21960Probable RING-H2 finger protein ATL5Gscf0513168-View
FV5G20140RING-H2 finger protein ATL1O (similar to)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM02G37296No description available.Gm02+View
GM14G35550No description available.Gm14+View
GM08G18870No description available.Gm08-View
GM13G01461No description available.Gm13-View
GM04G10610No description available.Gm04-View
GM18G01791No description available.Gm18-View
GM06G10460No description available.Gm06-View
GM08G07470No description available.Gm08-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G01660No description available.Chr08+View
GR12G14310No description available.Chr12+View
GR09G23310No description available.Chr09-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ6G028400No description available.chr6+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME08265G01330No description available.scaffold08265+View
ME06916G02150No description available.scaffold06916-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G099650RING-H2 zinc finger protein C putativechr3+View
MT2G009310RING-H2 zinc finger proteinchr2+View
MT4G093830RING-H2 zinc finger proteinchr4-View
MT5G064890RING-H2 zinc finger proteinchr5+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G08920Zinc finger, C3HC4 type domain containing protein, expressed E3 ubiquitin-protein ligase Os03g01882003-View
OS08G37760zinc finger, C3HC4 type domain containing protein, expressed8+View
OS06G11450zinc finger, C3HC4 type domain containing protein, expressed6-View
OS02G52210zinc finger, C3HC4 type domain containing protein, expressed2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G07130No description available.Chr05-View
PT05G16090No description available.Chr05-View
PT17G04930No description available.Chr17-View
PT07G09750No description available.Chr07+View
PT02G10180No description available.Chr02+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29908G02440No description available.29908+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL04G074790RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech04+View
SL11G010330RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech11+View
SL01G105610RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech01+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST11G009370RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr11-View
ST01G042760RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr01+View
ST12G025880Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr12+View
ST04G028570RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr04+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G09010No description available.scaffold_1-View
TC0008G09720No description available.scaffold_8-View
TC0002G12760No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G08410similar to AT4G09130|zinc finger (C3HC4-type RING finger) family proteinch6-2-View
TP1G30080similar to AT1G35330|zinc finger (C3HC4-type RING finger) family proteinch1-1+View
TP6G08420similar to AT4G09130|zinc finger (C3HC4-type RING finger) family proteinch6-3-View
TP1G19980similar to AT1G22500|zinc finger (C3HC4-type RING finger) family proteinch1-1+View
TP5G27290similar to AT1G72200|zinc finger (C3HC4-type RING finger) family proteinch5-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G04050name=GSVIVG01009096001;chr18+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G06160No description available.1-View
ZM09G27130No description available.9+View
ZM05G41030No description available.5+View
ZM07G16760No description available.7-View
ZM02G32050No description available.2-View
ZM04G27300No description available.4-View


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Gene id
Species
Description
Chromosome
Strand