Anchorpoints
- Gene id
- AT1G22190
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G72360 | Encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 (HRE1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding protein (TAIR:AT3G16770.1); Has 6097 Blast hits to 5793 proteins in 253 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6054; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein | 1 | + | View |
AT5G65130 | encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G39780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein | 5 | + | View |
AT1G78080 | Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling. related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink). related to AP2 4 | 1 | + | View |
AT2G22200 | Integrase-type DNA-binding superfamily protein encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G39780.1); Has 5636 Blast hits to 5603 proteins in 247 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 5606; Viruses - 6; Other Eukaryotes - 16 (source: NCBI BLink). | 2 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL2G27060 | No description available. | scaffold_2 | + | View |
AL1G23720 | No description available. | scaffold_1 | + | View |
AL7G01980 | No description available. | scaffold_7 | - | View |
AL8G31890 | No description available. | scaffold_8 | + | View |
AL1G37800 | No description available. | scaffold_1 | - | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00010G01750 | No description available. | scaffold00010 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR07G19000 | No description available. | A07 | - | View |
BR06G23030 | No description available. | A06 | + | View |
BR07G32820 | No description available. | A07 | + | View |
BR01G00690 | No description available. | A01 | - | View |
BR07G28550 | No description available. | A07 | + | View |
BR05G21390 | No description available. | A05 | - | View |
BR02G24620 | No description available. | A02 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV1G11230 | No description available. | Bvchr1.sca002 | - | View |
BV6G13290 | No description available. | Bvchr6.sca004 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL08G10710 | No description available. | Chr8 | + | View |
CL11G09520 | No description available. | Chr11 | + | View |
CL01G19140 | No description available. | Chr1 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00013G00620 | No description available. | CM3.5_scaffold00013 | + | View |
CM00007G07990 | No description available. | CM3.5_scaffold00007 | - | View |
CM00014G07350 | No description available. | CM3.5_scaffold00014 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00036G01100 | No description available. | supercontig_36 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_007G01570 | No description available. | scaffold_7 | - | View |
CRU_001G20810 | No description available. | scaffold_1 | + | View |
CRU_002G18120 | No description available. | scaffold_2 | + | View |
CRU_008G25200 | No description available. | scaffold_8 | + | View |
CRU_002G23590 | No description available. | scaffold_2 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00004G01870 | No description available. | scaffold00004 | + | View |
CS00099G00300 | No description available. | scaffold00099 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0006G19950 | No description available. | scaffold_6 | - | View |
EG0009G03450 | No description available. | scaffold_9 | - | View |
EG0006G04350 | No description available. | scaffold_6 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV5G19100 | Ethylene-responsive transcription factor RAP2-4 (probable) | LG5 | + | View |
FV0G23270 | Ethylene-responsive transcription factor RAP2-4 (probable) | scf0513168 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM04G11290 | No description available. | Gm04 | - | View |
GM14G34590 | No description available. | Gm14 | + | View |
GM06G11010 | No description available. | Gm06 | - | View |
GM05G31370 | No description available. | Gm05 | - | View |
GM18G02170 | No description available. | Gm18 | - | View |
GM08G14600 | No description available. | Gm08 | - | View |
GM13G01930 | No description available. | Gm13 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR10G04320 | No description available. | Chr10 | - | View |
GR07G24070 | No description available. | Chr07 | - | View |
GR09G23880 | No description available. | Chr09 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ4G043740 | No description available. | chr4 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD08G018190 | No description available. | 8 | + | View |
MD01G002600 | No description available. | 1 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME12455G00440 | No description available. | scaffold12455 | - | View |
ME07027G00090 | No description available. | scaffold07027 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT8G090350 | ethylene response factor | chr8 | - | View |
MT5G062700 | AP2 domain class transcription factor | chr5 | + | View |
MT3G074130 | ethylene response factor | chr3 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS03G09170 | ethylene-responsive transcription factor, putative, expressed | 3 | - | View |
OS08G31580 | ethylene-responsive transcription factor, putative, expressed | 8 | + | View |
OS02G51670 | ethylene-responsive transcription factor, putative, expressed | 2 | + | View |
OS09G20350 | ethylene-responsive transcription factor, putative, expressed | 9 | + | View |
OS06G11860 | ethylene-responsive transcription factor, putative, expressed | 6 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_006G18900 | No description available. | scaffold_6 | + | View |
PPE_001G51780 | No description available. | scaffold_1 | + | View |
PPE_005G14870 | No description available. | scaffold_5 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT05G07730 | No description available. | Chr05 | - | View |
PT02G09420 | No description available. | Chr02 | + | View |
PT07G09060 | No description available. | Chr07 | + | View |
PT05G16870 | No description available. | Chr05 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29908G01550 | No description available. | 29908 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL12G056980 | Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding | ch12 | + | View |
SL05G052030 | Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding | ch05 | - | View |
SL04G054910 | Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding | ch04 | + | View |
SL04G072900 | Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding | ch04 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST04G026930 | Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding | chr04 | - | View |
ST04G020890 | Ethylene-responsive transcription factor 5 (AHRD V1 *-*- ERF5_NICSY); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding | chr04 | - | View |
ST12G025520 | Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding | chr12 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G10020 | No description available. | scaffold_1 | - | View |
TC0008G10620 | No description available. | scaffold_8 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP2G28210 | similar to AT5G65130|AP2 domain-containing transcription factor, putative | ch2-4 | + | View |
TP5G33210 | similar to AT1G78080|RAP2.4 (related to AP2 4) | ch5-7 | + | View |
TP1G19690 | similar to AT1G22190|AP2 domain-containing transcription factor, putative | ch1-1 | + | View |
TP1G30610 | similar to AT1G36060|AP2 domain-containing transcription factor, putative | ch1-1 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G03340 | name=GSVIVG01009007001; | chr18 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM01G06490 | No description available. | 1 | - | View |
ZM04G27660 | No description available. | 4 | - | View |
ZM09G26940 | No description available. | 9 | + | View |
ZM07G12460 | No description available. | 7 | + | View |
ZM05G40750 | LOC100280553 | 5 | + | View |
ZM01G39000 | LOC542569 | 1 | + | View |