Anchorpoints

Gene id
AT1G14920
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G66350RGA-like 1 (RGL1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA-like 2 (TAIR:AT3G03450.1); Has 2708 Blast hits to 2634 proteins in 311 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2704; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development. RGA-like 11+View
AT2G01570Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development. GRAS family transcription factor family protein REPRESSOR OF GA1-3 1 (RGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT1G14920.1); Has 2724 Blast hits to 2666 proteins in 317 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 4; Plants - 2709; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).2-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL2G13340No description available.scaffold_2+View
AL1G15760No description available.scaffold_1+View
AL5G00570No description available.scaffold_5-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00045G01920No description available.scaffold00045+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G21830No description available.A09+View
BR06G35510DELLA protein RGA1A06+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G09700No description available.Chr2+View
CL01G06120No description available.Chr1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00005G02510No description available.CM3.5_scaffold00005+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00002G02260No description available.supercontig_2+View
CP00027G02600No description available.supercontig_27+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G14070No description available.scaffold_1+View
CRU_002G11600No description available.scaffold_2+View
CRU_005G00480No description available.scaffold_5-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00034G00300No description available.scaffold00034+View
CS00007G03860No description available.scaffold00007-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0007G16390No description available.scaffold_7+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM09G22110No description available.Gm09-View
GM11G33720No description available.Gm11+View
GM18G04500No description available.Gm18-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR02G17700No description available.Chr02+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04716G00220No description available.scaffold04716-View
ME04043G00190No description available.scaffold04043+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G33810No description available.scaffold_1-View
PPE_004G00670No description available.scaffold_4+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G13170No description available.Chr08-View
PT10G11070No description available.Chr10+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G011260GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI)%3B contains Interpro domain(s) IPR005202 GRAS transcription factor DELLA protein GAIch11-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G28690No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G23490similar to AT2G04890|SCL21 (SCARECROW-LIKE 21)ch3-2-View
TP2G13010similar to AT2G01570|RGA1 (REPRESSOR OF GA1-3 1)ch2-4-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G11460name=GSVIVG01037375001;chr6+View
VV01G06300name=GSVIVG01011710001;chr1-View
VV14G06420name=GSVIVG01030735001;chr14+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM09G23850No description available.9+View
ZM05G39460No description available.5-View


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Gene id
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Description
Chromosome
Strand