Anchorpoints

Gene id
AT1G12560
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G62980expansin A18 (EXPA18); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A7 (TAIR:AT1G12560.1); Has 2180 Blast hits to 2177 proteins in 164 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 39; Plants - 2093; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin A181+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G12930No description available.scaffold_1+View
AL2G02400No description available.scaffold_2-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR08G28150No description available.A08-View
BR09G49580No description available.A09-View
BR06G08400No description available.A06-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G08380No description available.Bvchr5.sca002-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G03100No description available.Chr1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00005G05830No description available.CM3.5_scaffold00005+View
CM00021G03320No description available.CM3.5_scaffold00021-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00029G00370No description available.supercontig_29-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G01910No description available.scaffold_2-View
CRU_001G11630No description available.scaffold_1+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00040G00510No description available.scaffold00040-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0004G15780No description available.scaffold_4-View
EG0005G04600No description available.scaffold_5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM17G14230No description available.Gm17-View
GM01G42370No description available.Gm01+View
GM11G03000No description available.Gm11-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR04G20610No description available.Chr04+View
GR06G21080No description available.Chr06-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ2G035450No description available.chr2+View
LJ4G023530No description available.chr4+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME07035G00560No description available.scaffold07035-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G011210expansin A10chr5-View
MT4G102450expansin A10chr4+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G09570No description available.scaffold_5+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G11290No description available.Chr01-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30190G02590No description available.30190+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G080060Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH)%3B contains Interpro domain(s) IPR002963 Expansinch08+View
SL08G007780Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH)%3B contains Interpro domain(s) IPR014734 Pollen allergen%2C N-terminalch08+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST08G005800Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR005132 Rare lipoprotein Achr08+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G26450No description available.scaffold_3+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G11150similar to AT1G12560|ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)ch1-1+View
TP2G01610similar to AT1G62980|ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)ch2-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV02G07520name=GSVIVG01019889001;chr2-View


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Gene id
Species
Description
Chromosome
Strand