Anchorpoints

Gene id
AT1G03880
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT4G28520Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. cruciferin 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus, embryo development ending in seed dormancy; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3); Has 6518 Blast hits to 3043 proteins in 462 species: Archae - 6; Bacteria - 857; Metazoa - 718; Fungi - 277; Plants - 2299; Viruses - 10; Other Eukaryotes - 2351 (source: NCBI BLink). cruciferin 34+View
AT5G44120CRUCIFERINA (CRA1); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell, seed; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: cruciferin 2 (TAIR:AT1G03880.1); Has 1047 Blast hits to 1009 proteins in 168 species: Archae - 0; Bacteria - 115; Metazoa - 2; Fungi - 0; Plants - 930; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. RmlC-like cupins superfamily protein5-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL1G03200No description available.scaffold_1+View
AL7G13290No description available.scaffold_7-View
AL8G05800No description available.scaffold_8+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR01G08600No description available.A01-View
BR09G53800No description available.A09-View
BR10G03750No description available.A10-View
BR00G07160No description available.Scaffold000111-View
BR06G38270No description available.A06+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL06G06830No description available.Chr6+View
CL07G01950No description available.Chr7-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00018G01090No description available.CM3.5_scaffold00018-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00165G00070No description available.supercontig_165+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G02790No description available.scaffold_1+View
CRU_007G11460No description available.scaffold_7-View
CRU_008G04310No description available.scaffold_8+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0008G24620No description available.scaffold_8+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM19G34770No description available.Gm19-View
GM03G32020No description available.Gm03-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR11G17440No description available.Chr11-View
GR04G05720No description available.Chr04-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ5G020440No description available.chr5-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME10563G01250No description available.scaffold10563-View
ME01551G00920No description available.scaffold01551-View
ME09880G00320No description available.scaffold09880+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G069920glycinin A5A4B3 subunitchr1+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G23710No description available.scaffold_8+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL09G090150Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI)%3B contains Interpro domain(s) IPR014710 RmlC-like jelly roll foldch09-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G25610No description available.scaffold_1+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G02740similar to AT1G03880|CRU2 (CRUCIFERIN 2)ch1-1+View
TP2G08950similar to AT1G03880|CRU2 (CRUCIFERIN 2)ch2-4+View
TP7G26500similar to AT4G28520|CRU3 (CRUCIFERIN 3)ch7-5+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV07G10960name=GSVIVG01028337001;chr7+View


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Description
Chromosome
Strand