Anchorpoints

Gene id
AL8G29440
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL5G16880No description available.scaffold_5+View
AL2G23730No description available.scaffold_2+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G62910RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G48070.2); Has 749 Blast hits to 665 proteins in 188 species: Archae - 0; Bacteria - 6; Metazoa - 241; Fungi - 216; Plants - 135; Viruses - 4; Other Eukaryotes - 147 (source: NCBI BLink). RING/U-box superfamily protein5+View
AT1G74870RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: sperm cell, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G48070.1); Has 508 Blast hits to 508 proteins in 180 species: Archae - 0; Bacteria - 2; Metazoa - 172; Fungi - 119; Plants - 127; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). RING/U-box superfamily protein1+View
AT3G48070RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G62910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). RING/U-box superfamily protein3+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G29430No description available.A06+View
BR02G39000No description available.A02+View
BR06G17290No description available.A06-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G13300No description available.scaffold_5+View
CRU_008G22980No description available.scaffold_8+View
CRU_002G20440No description available.scaffold_2+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM05G01690No description available.Gm05+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME12794G01530No description available.scaffold12794-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G071270CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech06+View
SL03G113700CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech03+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G027040CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR001841 Zinc finger, RING-typechr03+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G13940similar to AT3G48070|protein binding / zinc ion bindingch5-1-View
TP2G26050similar to AT5G62910|protein binding / zinc ion bindingch2-4+View


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Gene id
Species
Description
Chromosome
Strand