Anchorpoints

Gene id
AL8G17960
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G53290cytokinin response factor 3 (CRF3); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 4 (TAIR:AT4G27950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). cytokinin response factor 3 encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.5-View
AT2G46310CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. cytokinin response factor 5 (CRF5); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 6 (TAIR:AT3G61630.1); Has 5622 Blast hits to 5574 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5609; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink). cytokinin response factor 52+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G13630No description available.A03+View
BR10G07210No description available.A10-View
BR02G15890No description available.A02+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G06510No description available.Bvchr5.sca002-View
BV3G02670No description available.Bvchr3.sca003-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G09840No description available.Chr5+View
CL01G00490No description available.Chr1-View
CL05G01330No description available.Chr5+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00006G01390No description available.CM3.5_scaffold00006+View
CM00005G08520No description available.CM3.5_scaffold00005+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00003G00430No description available.supercontig_3+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G27960No description available.scaffold_4+View
CRU_008G13150No description available.scaffold_8-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00009G01860No description available.scaffold00009+View
CS00104G00400No description available.scaffold00104-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0011G02890No description available.scaffold_11+View
EG0005G07090No description available.scaffold_5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV7G37010Ethylene-responsive transcription factor CRF3 (probable)LG7-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM04G41740No description available.Gm04-View
GM06G13040No description available.Gm06+View
GM03G41640No description available.Gm03+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR07G10560No description available.Chr07+View
GR03G08220No description available.Chr03-View
GR08G27120No description available.Chr08-View
GR01G15690No description available.Chr01-View
GR06G20040No description available.Chr06+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD07G019540No description available.7+View
MD01G021330No description available.1+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME00341G00280No description available.scaffold00341-View
ME06089G00350No description available.scaffold06089-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G090760ethylene response factorchr3+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_002G17670No description available.scaffold_2+View
PPE_002G29340No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT12G03290No description available.Chr12-View
PT02G16740No description available.Chr02+View
PT15G02320No description available.Chr15-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30169G03130No description available.30169-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G081960Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF4_NICSY)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch08+View
SL06G051840Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch06+View
SL03G007460Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF4_TOBAC)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch03-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST06G016220Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr06-View
ST03G013720Ethylene-responsive transcription factor 2 (AHRD V1 *-*- ERF2_TOBAC); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr03-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G28720No description available.scaffold_3+View
TC0003G19260No description available.scaffold_3+View
TC0001G34500No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G15440similar to AT5G53290|CRF3 (CYTOKININ RESPONSE FACTOR 3)ch6-6-View


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Description
Chromosome
Strand