PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AL8G11630
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AL3G07610	No description available.	scaffold_3	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G25150	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT5G60980.2). Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain	3	-	View
AT5G48650	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 3431 Blast hits to 3335 proteins in 383 species: Archae - 4; Bacteria - 254; Metazoa - 1514; Fungi - 549; Plants - 825; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).	5	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR06G30840	No description available.	A06	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_008G08220	No description available.	scaffold_8	+	View
CRU_003G06470	No description available.	scaffold_3	-	View
CRU_003G24480	No description available.	scaffold_3	-	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00029G00940	No description available.	scaffold00029	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0011G17590	No description available.	scaffold_11	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV2G14250	Ras GTPase-activating protein-binding protein 1 (probable)	LG2	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM08G46190	No description available.	Gm08	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR07G15650	No description available.	Chr07	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD10G011760	No description available.	10	+	View
MD05G016130	No description available.	5	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_008G21350	No description available.	scaffold_8	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT02G24660	No description available.	Chr02	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL09G059310	Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA)%3B contains Interpro domain(s) IPR018222 Nuclear transport factor 2%2C Eukaryote	ch09	+	View
SL06G083300	Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA)%3B contains Interpro domain(s) IPR018222 Nuclear transport factor 2%2C Eukaryote	ch06	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0001G21400	No description available.	scaffold_1	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP2G19030	similar to AT5G48650\|nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	ch2-4	+	View