PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AL8G05290
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AL7G21920	No description available.	scaffold_7	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G44460	calmodulin like 43 calmodulin like 43 (CML43); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 42 (TAIR:AT4G20780.1); Has 15485 Blast hits to 11560 proteins in 1261 species: Archae - 1; Bacteria - 65; Metazoa - 6030; Fungi - 3167; Plants - 4134; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).	5	+	View
AT4G20780	calmodulin like 42 Calcium sensor involved in trichome branching. calmodulin like 42 (CML42); FUNCTIONS IN: calcium ion binding; INVOLVED IN: trichome branching; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 43 (TAIR:AT5G44460.1); Has 15351 Blast hits to 11255 proteins in 1265 species: Archae - 0; Bacteria - 33; Metazoa - 5903; Fungi - 3155; Plants - 4145; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).	4	-	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR08G12280	No description available.	A08	-	View
BR06G38040	No description available.	A06	-	View
BR01G11150	No description available.	A01	-	View
BR03G45510	No description available.	A03	-	View
BR00G00900	No description available.	Scaffold000167	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_008G03900	No description available.	scaffold_8	-	View
CRU_007G19720	No description available.	scaffold_7	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP7G18850	similar to AT4G20780\|calcium-binding protein, putative	ch7-4	-	View