PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AL7G22850
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G19670	RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60250.1); Has 3330 Blast hits to 3305 proteins in 225 species: Archae - 1; Bacteria - 6; Metazoa - 1257; Fungi - 660; Plants - 920; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).	4	-	View

Amborella trichopoda

Gene id	Description	Chromosome	Strand	Multiplicon
ATR_00032G00640	No description available.	scaffold00032	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR01G10620	No description available.	A01	-	View
BR03G45170	No description available.	A03	-	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL01G15790	No description available.	Chr1	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00135G00400	No description available.	supercontig_135	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_007G20530	No description available.	scaffold_7	+	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00008G02600	No description available.	scaffold00008	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0001G01690	No description available.	scaffold_1	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV3G10390	Probable E3 ubiquitin-protein ligase RNF217	LG3	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD05G008500	No description available.	5	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_004G10450	No description available.	scaffold_4	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT12G11900	No description available.	Chr12	-	View
PT15G11760	No description available.	Chr15	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G069230	IBR finger domain-containing protein (AHRD V1 *--- C1GML6_PARBD)%3B contains Interpro domain(s) IPR002867 Zinc finger%2C C6HC-type	ch02	+	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST02G015470	IBR finger domain protein (AHRD V1 *--- B6QWK9_PENMQ); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type	chr02	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0006G13740	No description available.	scaffold_6	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP7G18240	similar to AT4G19670\|zinc finger (C3HC4-type RING finger) family protein	ch7-4	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV10G07050	name=GSVIVG01026257001;	chr10	+	View