Anchorpoints

Gene id
AL7G18440
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL5G32390No description available.scaffold_5+View
AL4G34330No description available.scaffold_4+View
AL2G24420No description available.scaffold_2+View
AL6G33680No description available.scaffold_6-View
AL2G00470No description available.scaffold_2+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G11140encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). cytokinin response factor 1 (CRF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 2 (TAIR:AT4G23750.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). cytokinin response factor 14-View
AT1G75490Integrase-type DNA-binding superfamily protein encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G18450.1); Has 5736 Blast hits to 5602 proteins in 247 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5714; Viruses - 6; Other Eukaryotes - 14 (source: NCBI BLink).1+View
AT4G23750cytokinin response factor 2 (CRF2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 1 (TAIR:AT4G11140.1); Has 5899 Blast hits to 5717 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 5881; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). cytokinin response factor 2 encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Monopteros target gene.4+View
AT2G46310CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. cytokinin response factor 5 (CRF5); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 6 (TAIR:AT3G61630.1); Has 5622 Blast hits to 5574 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5609; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink). cytokinin response factor 52+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G47480No description available.A03+View
BR01G13750No description available.A01+View
BR03G25840No description available.A03-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G05590No description available.Bvchr1.sca001-View
BV1G08400No description available.Bvchr1.sca001-View
BV5G06510No description available.Bvchr5.sca002-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G19740No description available.Chr5-View
CL05G09840No description available.Chr5+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00005G07110No description available.CM3.5_scaffold00005+View
CM00005G08520No description available.CM3.5_scaffold00005+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00122G00260No description available.supercontig_122+View
CP00079G00400No description available.supercontig_79+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G16470No description available.scaffold_7-View
CRU_002G21080No description available.scaffold_2+View
CRU_006G28860No description available.scaffold_6-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00009G01860No description available.scaffold00009+View
CS00001G03980No description available.scaffold00001+View
CS00002G04890No description available.scaffold00002+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G13020No description available.scaffold_6+View
EG0004G14240No description available.scaffold_4-View
EG0004G19360No description available.scaffold_4+View
EG0005G07090No description available.scaffold_5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G04450Ethylene-responsive transcription factor CRF3 (probable)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM05G37120No description available.Gm05-View
GM06G03110No description available.Gm06-View
GM08G02460No description available.Gm08+View
GM01G43350No description available.Gm01+View
GM04G03070No description available.Gm04-View
GM11G02050No description available.Gm11+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR07G10560No description available.Chr07+View
GR09G19780No description available.Chr09-View
GR03G08220No description available.Chr03-View
GR08G12340No description available.Chr08+View
GR08G27120No description available.Chr08-View
GR01G15690No description available.Chr01-View
GR08G25230No description available.Chr08+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ4G046560No description available.chr4+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD12G015290No description available.12-View
MD08G001410No description available.8-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME02658G00570No description available.scaffold02658-View
ME05280G01070No description available.scaffold05280-View
ME00341G00280No description available.scaffold00341-View
ME06089G00350No description available.scaffold06089-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT1G023170AP2 domain class transcription factorchr1+View
MT3G112440dehydration-responsive element-binding proteinchr3+View
MT8G099215ethylene response factorchr8+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G38030No description available.scaffold_1-View
PPE_005G12270No description available.scaffold_5+View
PPE_002G29340No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G16740No description available.Chr02+View
PT03G13630No description available.Chr03+View
PT02G02940No description available.Chr02-View
PT05G23330No description available.Chr05+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G04700No description available.30170+View
RC30190G05000No description available.30190+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G081960Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF4_NICSY)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch08+View
SL04G080910Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch04+View
SL01G095500Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch01+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST04G034300Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr04+View
ST01G032950Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr01+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0008G03410No description available.scaffold_8+View
TC0003G28720No description available.scaffold_3+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G21700similar to AT4G23750|CRF2 (CYTOKININ RESPONSE FACTOR 2)ch7-4+View
TP5G30620similar to AT1G75490|DNA binding / transcription factorch5-7+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G09710name=GSVIVG01009801001;chr18+View


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Gene id
Species
Description
Chromosome
Strand