Anchorpoints
- Gene id
- AL7G18440
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL5G32390 | No description available. | scaffold_5 | + | View |
AL4G34330 | No description available. | scaffold_4 | + | View |
AL2G24420 | No description available. | scaffold_2 | + | View |
AL6G33680 | No description available. | scaffold_6 | - | View |
AL2G00470 | No description available. | scaffold_2 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT4G11140 | encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). cytokinin response factor 1 (CRF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 2 (TAIR:AT4G23750.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). cytokinin response factor 1 | 4 | - | View |
AT1G75490 | Integrase-type DNA-binding superfamily protein encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G18450.1); Has 5736 Blast hits to 5602 proteins in 247 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5714; Viruses - 6; Other Eukaryotes - 14 (source: NCBI BLink). | 1 | + | View |
AT4G23750 | cytokinin response factor 2 (CRF2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 1 (TAIR:AT4G11140.1); Has 5899 Blast hits to 5717 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 5881; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). cytokinin response factor 2 encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Monopteros target gene. | 4 | + | View |
AT2G46310 | CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. cytokinin response factor 5 (CRF5); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 6 (TAIR:AT3G61630.1); Has 5622 Blast hits to 5574 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5609; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink). cytokinin response factor 5 | 2 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR03G47480 | No description available. | A03 | + | View |
BR01G13750 | No description available. | A01 | + | View |
BR03G25840 | No description available. | A03 | - | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV1G05590 | No description available. | Bvchr1.sca001 | - | View |
BV1G08400 | No description available. | Bvchr1.sca001 | - | View |
BV5G06510 | No description available. | Bvchr5.sca002 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL05G19740 | No description available. | Chr5 | - | View |
CL05G09840 | No description available. | Chr5 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00005G07110 | No description available. | CM3.5_scaffold00005 | + | View |
CM00005G08520 | No description available. | CM3.5_scaffold00005 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00122G00260 | No description available. | supercontig_122 | + | View |
CP00079G00400 | No description available. | supercontig_79 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_007G16470 | No description available. | scaffold_7 | - | View |
CRU_002G21080 | No description available. | scaffold_2 | + | View |
CRU_006G28860 | No description available. | scaffold_6 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00009G01860 | No description available. | scaffold00009 | + | View |
CS00001G03980 | No description available. | scaffold00001 | + | View |
CS00002G04890 | No description available. | scaffold00002 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0006G13020 | No description available. | scaffold_6 | + | View |
EG0004G14240 | No description available. | scaffold_4 | - | View |
EG0004G19360 | No description available. | scaffold_4 | + | View |
EG0005G07090 | No description available. | scaffold_5 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV5G04450 | Ethylene-responsive transcription factor CRF3 (probable) | LG5 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM05G37120 | No description available. | Gm05 | - | View |
GM06G03110 | No description available. | Gm06 | - | View |
GM08G02460 | No description available. | Gm08 | + | View |
GM01G43350 | No description available. | Gm01 | + | View |
GM04G03070 | No description available. | Gm04 | - | View |
GM11G02050 | No description available. | Gm11 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR07G10560 | No description available. | Chr07 | + | View |
GR09G19780 | No description available. | Chr09 | - | View |
GR03G08220 | No description available. | Chr03 | - | View |
GR08G12340 | No description available. | Chr08 | + | View |
GR08G27120 | No description available. | Chr08 | - | View |
GR01G15690 | No description available. | Chr01 | - | View |
GR08G25230 | No description available. | Chr08 | + | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ4G046560 | No description available. | chr4 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD12G015290 | No description available. | 12 | - | View |
MD08G001410 | No description available. | 8 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME02658G00570 | No description available. | scaffold02658 | - | View |
ME05280G01070 | No description available. | scaffold05280 | - | View |
ME00341G00280 | No description available. | scaffold00341 | - | View |
ME06089G00350 | No description available. | scaffold06089 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT1G023170 | AP2 domain class transcription factor | chr1 | + | View |
MT3G112440 | dehydration-responsive element-binding protein | chr3 | + | View |
MT8G099215 | ethylene response factor | chr8 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_001G38030 | No description available. | scaffold_1 | - | View |
PPE_005G12270 | No description available. | scaffold_5 | + | View |
PPE_002G29340 | No description available. | scaffold_2 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT02G16740 | No description available. | Chr02 | + | View |
PT03G13630 | No description available. | Chr03 | + | View |
PT02G02940 | No description available. | Chr02 | - | View |
PT05G23330 | No description available. | Chr05 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30170G04700 | No description available. | 30170 | + | View |
RC30190G05000 | No description available. | 30190 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL08G081960 | Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF4_NICSY)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding | ch08 | + | View |
SL04G080910 | Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding | ch04 | + | View |
SL01G095500 | Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding | ch01 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST04G034300 | Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding | chr04 | + | View |
ST01G032950 | Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding | chr01 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0008G03410 | No description available. | scaffold_8 | + | View |
TC0003G28720 | No description available. | scaffold_3 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP7G21700 | similar to AT4G23750|CRF2 (CYTOKININ RESPONSE FACTOR 2) | ch7-4 | + | View |
TP5G30620 | similar to AT1G75490|DNA binding / transcription factor | ch5-7 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV18G09710 | name=GSVIVG01009801001; | chr18 | + | View |