Anchorpoints

Gene id
AL7G16650
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL8G16250No description available.scaffold_8-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G12610DWARF AND DELAYED FLOWERING 1 (DDF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G63030.2); Has 5207 Blast hits to 5205 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5202; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.1-View
AT4G25470C-repeat/DRE binding factor 2 Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. C-repeat/DRE binding factor 2 (CBF2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 1 (TAIR:AT4G25490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).4-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G48560No description available.A03-View
BR08G17630No description available.A08+View
BR02G16570No description available.A02+View
BR03G14310No description available.A03+View
BR01G27350No description available.A01+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G02910No description available.Chr1+View
CL05G08920No description available.Chr5-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00006G09840No description available.CM3.5_scaffold00006-View
CM00005G06020No description available.CM3.5_scaffold00005-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G14640No description available.scaffold_7+View
CRU_008G11870No description available.scaffold_8-View
CRU_001G11670No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00062G00560No description available.scaffold00062+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0011G01990No description available.scaffold_11-View
EG0001G23940No description available.scaffold_1+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV7G39140Ethylene-responsive transcription factor ERF026 (probable)LG7+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM20G29410No description available.Gm20-View
GM16G32330No description available.Gm16+View
GM09G27180No description available.Gm09+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR06G19720No description available.Chr06-View
GR08G28060No description available.Chr08+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD07G017960No description available.7-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME00341G01230No description available.scaffold00341+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_002G27680No description available.scaffold_2-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT12G13400No description available.Chr12+View
PT15G13630No description available.Chr15+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30147G00680No description available.30147+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G035700Ethylene-responsive transcription factor 1 (AHRD V1 *-** ERF1_ORYSJ)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch06-View
SL03G026270Ethylene-responsive transcription factor 4 (AHRD V1 *-** ERF78_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch03+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G015110Ethylene-responsive transcription factor 5 (AHRD V1 *-** EF102_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr03+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G17120No description available.scaffold_3-View
TC0003G26740No description available.scaffold_3-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G11200similar to AT1G12610|DDF1 (DWARF AND DELAYED FLOWERING 1)ch1-1-View
TP7G23510similar to AT4G25490|CBF1 (C-REPEAT/DRE BINDING FACTOR 1)ch7-4-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV16G00750name=GSVIVG01010631001;chr16-View


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Description
Chromosome
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