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Functional clusters
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BLAST
WorkbenchAnchorpoints
- Gene id
- AL7G07060
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT4G33990 | Tetratricopeptide repeat (TPR)-like superfamily protein embryo defective 2758 (EMB2758); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G30700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 4 | - | View |
Beta vulgaris
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BV9G14330 | No description available. | Bvchr9.sca026 | + | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00020G01180 | No description available. | supercontig_20 | - | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_003G28500 | No description available. | scaffold_3 | - | View |
| CRU_007G06060 | No description available. | scaffold_7 | + | View |
Citrus sinensis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CS00006G02190 | No description available. | scaffold00006 | + | View |
Eucalyptus grandis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| EG0009G06630 | No description available. | scaffold_9 | + | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR05G23750 | No description available. | Chr05 | + | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD05G023680 | No description available. | 5 | + | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT3G101700 | PPR containing plant-like protein | chr3 | - | View |
Ricinus communis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| RC29801G01210 | No description available. | 29801 | + | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL01G108180 | Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MA46_ARALY)%3B contains Interpro domain(s) IPR002885 Pentatricopeptide repeat | ch01 | + | View |
| SL02G093380 | Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MJP3_ARALY)%3B contains Interpro domain(s) IPR002885 Pentatricopeptide repeat | ch02 | - | View |
Solanum tuberosum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ST01G045360 | Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MA46_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat | chr01 | + | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC0002G09640 | No description available. | scaffold_2 | + | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP7G31850 | No description available. | ch7-5 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV18G07150 | name=GSVIVG01009496001; | chr18 | + | View |
| VV03G06620 | name=GSVIVG01031733001; | chr3 | + | View |