Anchorpoints
- Gene id
- AL7G03600
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G50360 | centrin2 centrin2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: centrin 2 (TAIR:AT4G37010.2); Has 32825 Blast hits to 20606 proteins in 1695 species: Archae - 1; Bacteria - 190; Metazoa - 13563; Fungi - 7187; Plants - 7027; Viruses - 2; Other Eukaryotes - 4855 (source: NCBI BLink). | 3 | + | View |
AT4G37010 | centrin 2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: DNA repair; LOCATED IN: cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: centrin2 (TAIR:AT3G50360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). centrin 2 Encodes a member of the Centrin family. Mutants are hypersensitive to UV and prone to UV induced DNA damage. Based on sequence similarity and mutant phenotype CEN2 is thought to be involved in nucelotide excision repair/DNA repair. | 4 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV0G03570 | No description available. | 0098.scaffold00338 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL02G13100 | No description available. | Chr2 | + | View |
CL02G06030 | No description available. | Chr2 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00045G01850 | No description available. | CM3.5_scaffold00045 | + | View |
CM00034G00480 | No description available. | CM3.5_scaffold00034 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00055G01530 | No description available. | supercontig_55 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_005G15610 | No description available. | scaffold_5 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00006G02180 | No description available. | scaffold00006 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G07300 | No description available. | scaffold_9 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV1G18380 | Caltractin (similar to) | LG1 | + | View |
FV5G37770 | Probable calcium-binding protein CML41 (similar to) | LG5 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM17G20160 | No description available. | Gm17 | + | View |
GM11G06030 | No description available. | Gm11 | + | View |
GM01G39240 | No description available. | Gm01 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR11G10550 | No description available. | Chr11 | - | View |
GR07G21240 | No description available. | Chr07 | - | View |
GR03G02310 | No description available. | Chr03 | - | View |
GR08G07020 | No description available. | Chr08 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD02G015200 | No description available. | 2 | - | View |
MD15G021850 | No description available. | 15 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME03060G00180 | No description available. | scaffold03060 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT5G017510 | EF hand calcium-binding family protein | chr5 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_007G15570 | No description available. | scaffold_7 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT05G13800 | No description available. | Chr05 | - | View |
PT07G04290 | No description available. | Chr07 | - | View |
PT05G12810 | No description available. | Chr05 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30115G00150 | No description available. | 30115 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL02G065000 | Calmodulin-like protein (AHRD V1 ***- Q67TZ4_ORYSJ)%3B contains Interpro domain(s) IPR011992 EF-Hand type | ch02 | + | View |
SL02G090810 | Calmodulin (AHRD V1 ***- Q1WLX8_CHLIN)%3B contains Interpro domain(s) IPR011992 EF-Hand type | ch02 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST02G011720 | Calmodulin-like protein (AHRD V1 ***- Q67TZ4_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand type | chr02 | + | View |
ST02G011080 | Calmodulin 4 (AHRD V1 ***- E0V8D0_MICOH); contains Interpro domain(s) IPR011992 EF-Hand type | chr02 | - | View |
ST02G032030 | Calmodulin (AHRD V1 ***- CALM_STYLE); contains Interpro domain(s) IPR011992 EF-Hand type | chr02 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G05200 | No description available. | scaffold_1 | - | View |
TC0001G04060 | No description available. | scaffold_1 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G11820 | similar to AT3G50360|ATCEN2 (CENTRIN2) | ch5-1 | - | View |
TP7G34750 | similar to AT4G37010|caltractin, putative / centrin, putative | ch7-6 | - | View |
TP2G14880 | similar to AT3G25600|calcium ion binding | ch2-4 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV07G05580 | name=GSVIVG01022137001; | chr7 | + | View |