Anchorpoints

Gene id
AL7G03600
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL5G19850No description available.scaffold_5+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G50360centrin2 centrin2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: centrin 2 (TAIR:AT4G37010.2); Has 32825 Blast hits to 20606 proteins in 1695 species: Archae - 1; Bacteria - 190; Metazoa - 13563; Fungi - 7187; Plants - 7027; Viruses - 2; Other Eukaryotes - 4855 (source: NCBI BLink).3+View
AT4G37010centrin 2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: DNA repair; LOCATED IN: cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: centrin2 (TAIR:AT3G50360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). centrin 2 Encodes a member of the Centrin family. Mutants are hypersensitive to UV and prone to UV induced DNA damage. Based on sequence similarity and mutant phenotype CEN2 is thought to be involved in nucelotide excision repair/DNA repair.4+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV0G03570No description available.0098.scaffold00338+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G13100No description available.Chr2+View
CL02G06030No description available.Chr2-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00045G01850No description available.CM3.5_scaffold00045+View
CM00034G00480No description available.CM3.5_scaffold00034-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00055G01530No description available.supercontig_55+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G15610No description available.scaffold_5+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00006G02180No description available.scaffold00006+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G07300No description available.scaffold_9+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV1G18380Caltractin (similar to)LG1+View
FV5G37770Probable calcium-binding protein CML41 (similar to)LG5-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM17G20160No description available.Gm17+View
GM11G06030No description available.Gm11+View
GM01G39240No description available.Gm01-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR11G10550No description available.Chr11-View
GR07G21240No description available.Chr07-View
GR03G02310No description available.Chr03-View
GR08G07020No description available.Chr08+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD02G015200No description available.2-View
MD15G021850No description available.15-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03060G00180No description available.scaffold03060-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G017510EF hand calcium-binding family proteinchr5-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_007G15570No description available.scaffold_7+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G13800No description available.Chr05-View
PT07G04290No description available.Chr07-View
PT05G12810No description available.Chr05+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30115G00150No description available.30115-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G065000Calmodulin-like protein (AHRD V1 ***- Q67TZ4_ORYSJ)%3B contains Interpro domain(s) IPR011992 EF-Hand typech02+View
SL02G090810Calmodulin (AHRD V1 ***- Q1WLX8_CHLIN)%3B contains Interpro domain(s) IPR011992 EF-Hand typech02-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G011720Calmodulin-like protein (AHRD V1 ***- Q67TZ4_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand typechr02+View
ST02G011080Calmodulin 4 (AHRD V1 ***- E0V8D0_MICOH); contains Interpro domain(s) IPR011992 EF-Hand typechr02-View
ST02G032030Calmodulin (AHRD V1 ***- CALM_STYLE); contains Interpro domain(s) IPR011992 EF-Hand typechr02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G05200No description available.scaffold_1-View
TC0001G04060No description available.scaffold_1+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G11820similar to AT3G50360|ATCEN2 (CENTRIN2)ch5-1-View
TP7G34750similar to AT4G37010|caltractin, putative / centrin, putativech7-6-View
TP2G14880similar to AT3G25600|calcium ion bindingch2-4+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV07G05580name=GSVIVG01022137001;chr7+View


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Gene id
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Description
Chromosome
Strand