Anchorpoints

Gene id
AL7G00100
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL1G21250No description available.scaffold_1-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G20190member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin 11 expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).1-View
AT2G20750expansin B1 (EXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B3 (TAIR:AT4G28250.1); Has 2076 Blast hits to 2069 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 9; Plants - 2024; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin B12+View
AT4G38210expansin A20 expansin A20 (EXPA20); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, response to karrikin, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A9 (TAIR:AT5G02260.1); Has 2080 Blast hits to 2077 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 2051; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.4-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G14570No description available.A06-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV9G04020No description available.Bvchr9.sca025+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G03230No description available.Chr2-View
CL02G03700No description available.Chr2-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00019G01950No description available.CM3.5_scaffold00019-View
CM00026G00130No description available.CM3.5_scaffold00026-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G00100No description available.scaffold_7-View
CRU_001G18900No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G05960No description available.scaffold00002-View
CS00023G01990No description available.scaffold00023-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G12260No description available.scaffold_9+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G38050Expansin-A11 (AtEXPA11), Precursor (putative)LG2+View
FV2G12560Expansin-A20 (AtEXPA20), Precursor (similar to)LG2+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G19900No description available.scaffold_8+View
PPE_001G36900No description available.scaffold_1+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G20830No description available.Chr04+View
PT05G24410No description available.Chr05-View
PT09G16950No description available.Chr09+View
PT02G01790No description available.Chr02+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30170G05960No description available.30170-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G14210No description available.scaffold_2+View
TC0008G04780No description available.scaffold_8-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G17960similar to AT1G20190|ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)ch1-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV03G03220name=GSVIVG01023857001;chr3+View


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Gene id
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Description
Chromosome
Strand