Anchorpoints

Gene id
AL6G31620
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL2G20740No description available.scaffold_2+View
AL1G37430No description available.scaffold_1-View
AL1G24270No description available.scaffold_1-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G09560Protease-associated (PA) RING/U-box zinc finger family protein Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 8638 Blast hits to 8590 proteins in 307 species: Archae - 0; Bacteria - 82; Metazoa - 2131; Fungi - 686; Plants - 4708; Viruses - 16; Other Eukaryotes - 1015 (source: NCBI BLink).4-View
AT1G71980Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G22670.1); Has 15658 Blast hits to 9675 proteins in 411 species: Archae - 0; Bacteria - 271; Metazoa - 3014; Fungi - 1211; Plants - 4865; Viruses - 29; Other Eukaryotes - 6268 (source: NCBI BLink). Protease-associated (PA) RING/U-box zinc finger family protein1+View
AT1G22670Protease-associated (PA) RING/U-box zinc finger family protein Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 8678 Blast hits to 8642 proteins in 327 species: Archae - 0; Bacteria - 157; Metazoa - 2256; Fungi - 639; Plants - 4696; Viruses - 9; Other Eukaryotes - 921 (source: NCBI BLink).1-View
AT1G35625RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G35630.1); Has 8074 Blast hits to 8052 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 2068; Fungi - 599; Plants - 4611; Viruses - 2; Other Eukaryotes - 794 (source: NCBI BLink).1-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G25310No description available.A03-View
BR07G28250No description available.A07+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G03170No description available.Bvchr1.sca001+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00008G00650No description available.CM3.5_scaffold00008+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00066G00310No description available.supercontig_66-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G17700No description available.scaffold_2+View
CRU_006G27050No description available.scaffold_6-View
CRU_001G21270No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00002G01780No description available.scaffold00002-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0006G21410No description available.scaffold_6-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM10G36160No description available.Gm10-View
GM20G31460No description available.Gm20+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G28950No description available.Chr09-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME09565G00340No description available.scaffold09565-View
ME06814G00120No description available.scaffold06814-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G56230No description available.scaffold_1+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT13G11150No description available.Chr13-View
PT19G08250No description available.Chr19-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G065330Ring finger protein 13 (AHRD V1 ***- Q66JJ1_XENTR)%3B contains Interpro domain(s) IPR003137 Protease-associated PAch06-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0008G18440No description available.scaffold_8+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G27050similar to AT1G71980|protease-associated zinc finger (C3HC4-type RING finger) family proteinch5-6+View
TP6G08070similar to AT4G09560|peptidase/ protein binding / zinc ion bindingch6-2+View
TP1G20180similar to AT1G22670|protease-associated zinc finger (C3HC4-type RING finger) family proteinch1-1-View


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Gene id
Species
Description
Chromosome
Strand