Anchorpoints
- Gene id
- AL6G31620
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL2G20740 | No description available. | scaffold_2 | + | View |
AL1G37430 | No description available. | scaffold_1 | - | View |
AL1G24270 | No description available. | scaffold_1 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT4G09560 | Protease-associated (PA) RING/U-box zinc finger family protein Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 8638 Blast hits to 8590 proteins in 307 species: Archae - 0; Bacteria - 82; Metazoa - 2131; Fungi - 686; Plants - 4708; Viruses - 16; Other Eukaryotes - 1015 (source: NCBI BLink). | 4 | - | View |
AT1G71980 | Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G22670.1); Has 15658 Blast hits to 9675 proteins in 411 species: Archae - 0; Bacteria - 271; Metazoa - 3014; Fungi - 1211; Plants - 4865; Viruses - 29; Other Eukaryotes - 6268 (source: NCBI BLink). Protease-associated (PA) RING/U-box zinc finger family protein | 1 | + | View |
AT1G22670 | Protease-associated (PA) RING/U-box zinc finger family protein Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 8678 Blast hits to 8642 proteins in 327 species: Archae - 0; Bacteria - 157; Metazoa - 2256; Fungi - 639; Plants - 4696; Viruses - 9; Other Eukaryotes - 921 (source: NCBI BLink). | 1 | - | View |
AT1G35625 | RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G35630.1); Has 8074 Blast hits to 8052 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 2068; Fungi - 599; Plants - 4611; Viruses - 2; Other Eukaryotes - 794 (source: NCBI BLink). | 1 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR03G25310 | No description available. | A03 | - | View |
BR07G28250 | No description available. | A07 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV1G03170 | No description available. | Bvchr1.sca001 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00008G00650 | No description available. | CM3.5_scaffold00008 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00066G00310 | No description available. | supercontig_66 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_002G17700 | No description available. | scaffold_2 | + | View |
CRU_006G27050 | No description available. | scaffold_6 | - | View |
CRU_001G21270 | No description available. | scaffold_1 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00002G01780 | No description available. | scaffold00002 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0006G21410 | No description available. | scaffold_6 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM10G36160 | No description available. | Gm10 | - | View |
GM20G31460 | No description available. | Gm20 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR09G28950 | No description available. | Chr09 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME09565G00340 | No description available. | scaffold09565 | - | View |
ME06814G00120 | No description available. | scaffold06814 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_001G56230 | No description available. | scaffold_1 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT13G11150 | No description available. | Chr13 | - | View |
PT19G08250 | No description available. | Chr19 | - | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL06G065330 | Ring finger protein 13 (AHRD V1 ***- Q66JJ1_XENTR)%3B contains Interpro domain(s) IPR003137 Protease-associated PA | ch06 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0008G18440 | No description available. | scaffold_8 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G27050 | similar to AT1G71980|protease-associated zinc finger (C3HC4-type RING finger) family protein | ch5-6 | + | View |
TP6G08070 | similar to AT4G09560|peptidase/ protein binding / zinc ion binding | ch6-2 | + | View |
TP1G20180 | similar to AT1G22670|protease-associated zinc finger (C3HC4-type RING finger) family protein | ch1-1 | - | View |