Anchorpoints

Gene id
AL6G11400
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G25810Integrase-type DNA-binding superfamily protein TINY (tny); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G11590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.5-View
AT2G25820encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Integrase-type DNA-binding superfamily protein Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: sepal, root, seed, stamen; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G32800.1); Has 5828 Blast hits to 5681 proteins in 265 species: Archae - 0; Bacteria - 5; Metazoa - 20; Fungi - 4; Plants - 5778; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).2+View
AT5G11590Integrase-type DNA-binding superfamily protein TINY2 (TINY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, embryo, hypocotyl, leaf; EXPRESSED DURING: LP.10 ten leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.5-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G26760No description available.A06-View
BR01G05140No description available.A01-View
BR02G05600No description available.A02-View
BR10G22180No description available.A10+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV2G15420No description available.Bvchr2.sca003+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL07G12920No description available.Chr7+View
CL11G09290No description available.Chr11-View
CL08G12000No description available.Chr8-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00014G05070No description available.CM3.5_scaffold00014-View
CM01596G01770No description available.CM3.5_scaffold01596+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00091G00650No description available.supercontig_91+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_006G09820No description available.scaffold_6-View
CRU_006G22900No description available.scaffold_6-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00005G01000No description available.scaffold00005+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0003G23060No description available.scaffold_3+View
EG0003G04670No description available.scaffold_3+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G35240Dehydration-responsive element-binding protein 3 (similar to)LG2-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM04G08901No description available.Gm04+View
GM06G08990No description available.Gm06+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR04G28980No description available.Chr04-View
GR09G05020No description available.Chr09-View
GR10G10660No description available.Chr10-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD08G012180No description available.8-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G110205AP2 domain class transcription factorchr3+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS01G10370AP2 domain containing protein, expressed1-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G45250No description available.scaffold_1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT06G23860No description available.Chr06-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29794G00790No description available.29794+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST11G027390Ethylene-responsive transcription factor 10 (AHRD V1 *-*- ERF77_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr11-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0009G04220No description available.scaffold_9+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G21820similar to AT5G25810|tny (TINY)ch2-4+View
TP6G32020similar to AT5G11590|TINY2 (TINY2)ch6-6+View


Download

Gene id
Species
Description
Chromosome
Strand