PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AL6G10100
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AL7G02300	No description available.	scaffold_7	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G40030	Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14638 Blast hits to 14630 proteins in 7251 species: Archae - 0; Bacteria - 0; Metazoa - 10605; Fungi - 2037; Plants - 1272; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink). Histone superfamily protein	4	-	View
AT5G10390	Histone superfamily protein Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).	5	-	View
AT5G65350	histone 3 11 histone 3 11 (HTR11); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).	5	-	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR03G04240	No description available.	A03	-	View
BR09G07200	No description available.	A09	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_006G08650	No description available.	scaffold_6	-	View
CRU_007G01880	No description available.	scaffold_7	-	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00059G00550	No description available.	scaffold00059	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV5G19750	Histone H3.3	LG5	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM18G01861	No description available.	Gm18	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR03G04130	No description available.	Chr03	-	View
GR11G11060	No description available.	Chr11	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME08265G01380	No description available.	scaffold08265	-	View
ME12455G00050	No description available.	scaffold12455	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_006G19960	No description available.	scaffold_6	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT05G07230	No description available.	Chr05	+	View
PT02G10020	No description available.	Chr02	-	View
PT07G09670	No description available.	Chr07	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL05G051500	Histone H3 (AHRD V1 ***- A8MRL0_ARATH)%3B contains Interpro domain(s) IPR000164 Histone H3	ch05	+	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST05G023940	Histone H3 (AHRD V1 ***- A8MRL0_ARATH); contains Interpro domain(s) IPR000164 Histone H3	chr05	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0001G09030	No description available.	scaffold_1	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP6G33050	similar to AT5G10400\|histone H3	ch6-6	+	View