Anchorpoints

Gene id
AL6G04990
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL4G14800No description available.scaffold_4-View
AL4G27230No description available.scaffold_4-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G40370laccase 5 laccase 5 (LAC5); FUNCTIONS IN: laccase activity; INVOLVED IN: response to copper ion; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 12 (TAIR:AT5G05390.1); Has 10120 Blast hits to 8186 proteins in 1337 species: Archae - 37; Bacteria - 4008; Metazoa - 431; Fungi - 3685; Plants - 1575; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink). putative laccase, a member of laccase family of genes (17 members in Arabidopsis).2-View
AT5G05390putative laccase, a member of laccase family of genes (17 members in Arabidopsis). laccase 12 laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5+View
AT2G30210laccase 3 putative laccase, a member of laccase family of genes (17 members in Arabidopsis). laccase 3 (LAC3); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: hypocotyl, fruit, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 13 (TAIR:AT5G07130.1); Has 11124 Blast hits to 9161 proteins in 1586 species: Archae - 42; Bacteria - 5039; Metazoa - 506; Fungi - 3547; Plants - 1577; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).2-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR04G24050No description available.A04-View
BR02G04060No description available.A02+View
BR10G23770No description available.A10+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV0G59740No description available.Bvchr2_un.sca001+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00019G01210No description available.supercontig_19+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G11050No description available.scaffold_4-View
CRU_004G21880No description available.scaffold_4-View
CRU_006G04210No description available.scaffold_6+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0007G24730No description available.scaffold_7-View
EG0010G01470No description available.scaffold_10+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV7G30410Laccase-5, Precursor (similar to)LG7-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM14G06070No description available.Gm14+View
GM11G35700No description available.Gm11-View
GM02G42940No description available.Gm02+View
GM14G37810No description available.Gm14-View
GM18G02690No description available.Gm18+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR11G29000No description available.Chr11+View
GR10G19420No description available.Chr10+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G083360laccase/diphenol oxidase family proteinchr5-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS01G61160Laccase-3 laccase precursor protein, putative, expressed1+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_002G24710No description available.scaffold_2-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT10G18350No description available.Chr10+View
PT08G07370No description available.Chr08-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29729G00270No description available.29729-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G050530Laccase (AHRD V1 ***- Q9ZP47_POPTR)%3B contains Interpro domain(s) IPR017761 Laccasech06-View
SL05G052340Laccase (AHRD V1 ***- Q9ZP47_POPTR)%3B contains Interpro domain(s) IPR017761 Laccasech05-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST05G025000Laccase (AHRD V1 ***- Q9ZP47_POPTR); contains Interpro domain(s) IPR017761 Laccasechr05-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0010G00890No description available.scaffold_10r+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G22690similar to AT2G40370|LAC5 (laccase 5)ch4-6-View
TP6G37430similar to AT5G05390|LAC12 (laccase 12)ch6-6-View
TP4G12800similar to AT2G30210|LAC3 (laccase 3)ch4-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV13G09850name=GSVIVG01032744001;chr13-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM03G28090L-ascorbate oxidase3-View
ZM08G32650No description available.8-View
ZM01G12650No description available.1+View


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Gene id
Species
Description
Chromosome
Strand