Anchorpoints

Gene id
AL5G31840
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL4G33710No description available.scaffold_4+View
AL1G13340No description available.scaffold_1+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G12760Zinc finger, C3HC4 type (RING finger) family protein Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0; Bacteria - 6; Metazoa - 2638; Fungi - 764; Plants - 5094; Viruses - 23; Other Eukaryotes - 1348 (source: NCBI BLink).1+View
AT3G61180RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT4G11680.1); Has 9287 Blast hits to 9262 proteins in 268 species: Archae - 0; Bacteria - 6; Metazoa - 2550; Fungi - 691; Plants - 4858; Viruses - 35; Other Eukaryotes - 1147 (source: NCBI BLink). RING/U-box superfamily protein3+View
AT4G11680Zinc finger, C3HC4 type (RING finger) family protein Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).4-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G12980No description available.A09-View
BR09G40460No description available.A09+View
BR04G27240No description available.A04+View
BR05G05250No description available.A05+View
BR10G09310No description available.A10+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G07660No description available.Bvchr1.sca001+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G02040No description available.Chr5-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00006G02230No description available.CM3.5_scaffold00006-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G27430No description available.scaffold_4+View
CRU_001G11880No description available.scaffold_1+View
CRU_006G29560No description available.scaffold_6-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00001G02570No description available.scaffold00001+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0004G18530No description available.scaffold_4+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV7G09250E3 ubiquitin-protein ligase At4g11680 (probable)LG7-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM11G02830No description available.Gm11-View
GM05G03430No description available.Gm05-View
GM01G42630No description available.Gm01+View
GM18G45940No description available.Gm18-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR03G16100No description available.Chr03-View
GR07G09630No description available.Chr07+View
GR08G24430No description available.Chr08+View
GR04G20860No description available.Chr04+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ2G035840No description available.chr2+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD02G000140No description available.2+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03942G00570No description available.scaffold03942+View
ME04882G00230No description available.scaffold04882-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G076010RING zinc finger protein C putativechr7-View
MT5G010720zinc finger C C3HC4 type (RING finger) proteinchr5-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_002G15510No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT03G12330No description available.Chr03+View
PT02G15520No description available.Chr02+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30190G03220No description available.30190+View
RC30174G02280No description available.30174+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL01G091600RING finger family protein (AHRD V1 *-*- D6RU92_SILLA)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-typech01-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST01G030760E3 ubiquitin-protein ligase At1g12760 (AHRD V1 **-* RING1_ARATH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr01-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G36280No description available.scaffold_1-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G11320similar to AT1G12760|protein binding / ubiquitin-protein ligase/ zinc ion bindingch1-1+View
TP5G02190similar to AT3G61180|zinc finger (C3HC4-type RING finger) family proteinch5-1-View
TP6G05790similar to AT4G11680|zinc finger (C3HC4-type RING finger) family proteinch6-1+View
TP4G27830similar to AT3G61180|zinc finger (C3HC4-type RING finger) family proteinch4-6+View


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Description
Chromosome
Strand