Anchorpoints
- Gene id
- AL5G31840
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL4G33710 | No description available. | scaffold_4 | + | View |
AL1G13340 | No description available. | scaffold_1 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G12760 | Zinc finger, C3HC4 type (RING finger) family protein Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0; Bacteria - 6; Metazoa - 2638; Fungi - 764; Plants - 5094; Viruses - 23; Other Eukaryotes - 1348 (source: NCBI BLink). | 1 | + | View |
AT3G61180 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT4G11680.1); Has 9287 Blast hits to 9262 proteins in 268 species: Archae - 0; Bacteria - 6; Metazoa - 2550; Fungi - 691; Plants - 4858; Viruses - 35; Other Eukaryotes - 1147 (source: NCBI BLink). RING/U-box superfamily protein | 3 | + | View |
AT4G11680 | Zinc finger, C3HC4 type (RING finger) family protein Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 4 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR09G12980 | No description available. | A09 | - | View |
BR09G40460 | No description available. | A09 | + | View |
BR04G27240 | No description available. | A04 | + | View |
BR05G05250 | No description available. | A05 | + | View |
BR10G09310 | No description available. | A10 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV1G07660 | No description available. | Bvchr1.sca001 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL05G02040 | No description available. | Chr5 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00006G02230 | No description available. | CM3.5_scaffold00006 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_004G27430 | No description available. | scaffold_4 | + | View |
CRU_001G11880 | No description available. | scaffold_1 | + | View |
CRU_006G29560 | No description available. | scaffold_6 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00001G02570 | No description available. | scaffold00001 | + | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0004G18530 | No description available. | scaffold_4 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV7G09250 | E3 ubiquitin-protein ligase At4g11680 (probable) | LG7 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM11G02830 | No description available. | Gm11 | - | View |
GM05G03430 | No description available. | Gm05 | - | View |
GM01G42630 | No description available. | Gm01 | + | View |
GM18G45940 | No description available. | Gm18 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR03G16100 | No description available. | Chr03 | - | View |
GR07G09630 | No description available. | Chr07 | + | View |
GR08G24430 | No description available. | Chr08 | + | View |
GR04G20860 | No description available. | Chr04 | + | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ2G035840 | No description available. | chr2 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD02G000140 | No description available. | 2 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME03942G00570 | No description available. | scaffold03942 | + | View |
ME04882G00230 | No description available. | scaffold04882 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT7G076010 | RING zinc finger protein C putative | chr7 | - | View |
MT5G010720 | zinc finger C C3HC4 type (RING finger) protein | chr5 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_002G15510 | No description available. | scaffold_2 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT03G12330 | No description available. | Chr03 | + | View |
PT02G15520 | No description available. | Chr02 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30190G03220 | No description available. | 30190 | + | View |
RC30174G02280 | No description available. | 30174 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL01G091600 | RING finger family protein (AHRD V1 *-*- D6RU92_SILLA)%3B contains Interpro domain(s) IPR018957 Zinc finger%2C C3HC4 RING-type | ch01 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST01G030760 | E3 ubiquitin-protein ligase At1g12760 (AHRD V1 **-* RING1_ARATH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type | chr01 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0001G36280 | No description available. | scaffold_1 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G11320 | similar to AT1G12760|protein binding / ubiquitin-protein ligase/ zinc ion binding | ch1-1 | + | View |
TP5G02190 | similar to AT3G61180|zinc finger (C3HC4-type RING finger) family protein | ch5-1 | - | View |
TP6G05790 | similar to AT4G11680|zinc finger (C3HC4-type RING finger) family protein | ch6-1 | + | View |
TP4G27830 | similar to AT3G61180|zinc finger (C3HC4-type RING finger) family protein | ch4-6 | + | View |