PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AL5G19850
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AL7G03600	No description available.	scaffold_7	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G50360	centrin2 centrin2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: centrin 2 (TAIR:AT4G37010.2); Has 32825 Blast hits to 20606 proteins in 1695 species: Archae - 1; Bacteria - 190; Metazoa - 13563; Fungi - 7187; Plants - 7027; Viruses - 2; Other Eukaryotes - 4855 (source: NCBI BLink).	3	+	View
AT3G50770	calmodulin-like 41 (CML41); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-like 38 (TAIR:AT1G76650.3); Has 18492 Blast hits to 11277 proteins in 1402 species: Archae - 0; Bacteria - 68; Metazoa - 6531; Fungi - 4523; Plants - 4805; Viruses - 0; Other Eukaryotes - 2565 (source: NCBI BLink). calmodulin-like 41	3	+	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00034G00480	No description available.	CM3.5_scaffold00034	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_005G15610	No description available.	scaffold_5	+	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00006G02180	No description available.	scaffold00006	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV1G18380	Caltractin (similar to)	LG1	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM17G20160	No description available.	Gm17	+	View
GM11G06030	No description available.	Gm11	+	View
GM01G39240	No description available.	Gm01	-	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR11G10550	No description available.	Chr11	-	View
GR07G21240	No description available.	Chr07	-	View
GR08G07020	No description available.	Chr08	+	View
GR13G04340	No description available.	Chr13	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD02G015200	No description available.	2	-	View
MD15G021850	No description available.	15	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_007G15570	No description available.	scaffold_7	+	View
PPE_007G16930	No description available.	scaffold_7	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT05G13800	No description available.	Chr05	-	View
PT07G04290	No description available.	Chr07	-	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC30115G00150	No description available.	30115	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G065000	Calmodulin-like protein (AHRD V1 ***- Q67TZ4_ORYSJ)%3B contains Interpro domain(s) IPR011992 EF-Hand type	ch02	+	View
SL02G090810	Calmodulin (AHRD V1 ***- Q1WLX8_CHLIN)%3B contains Interpro domain(s) IPR011992 EF-Hand type	ch02	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST01G045370	Calmodulin-like protein (AHRD V1 ***- Q67TZ4_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand type	chr01	-	View
ST02G032030	Calmodulin (AHRD V1 ***- CALM_STYLE); contains Interpro domain(s) IPR011992 EF-Hand type	chr02	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP5G11820	similar to AT3G50360\|ATCEN2 (CENTRIN2)	ch5-1	-	View
TP7G34750	similar to AT4G37010\|caltractin, putative / centrin, putative	ch7-6	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV07G05580	name=GSVIVG01022137001;	chr7	+	View