Anchorpoints

Gene id
AL5G17280
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G48430relative of early flowering 6 Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins. relative of early flowering 6 (REF6); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C2H2-like (InterPro:IPR015880), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, C2H2-type (InterPro:IPR007087), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (TAIR:AT5G04240.1); Has 105567 Blast hits to 35250 proteins in 1010 species: Archae - 0; Bacteria - 23; Metazoa - 99094; Fungi - 2247; Plants - 673; Viruses - 7; Other Eukaryotes - 3523 (source: NCBI BLink).3+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G17030No description available.A06-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL03G03270No description available.Chr3+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00001G04270No description available.CM3.5_scaffold00001+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00004G00500No description available.supercontig_4+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G13700No description available.scaffold_5+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00020G00250No description available.scaffold00020-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0011G23110No description available.scaffold_11-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G09510Jumonji/ARID domain-containing protein 2 (probable)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM04G36620No description available.Gm04+View
GM06G18290No description available.Gm06+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR01G06190No description available.Chr01-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ4G026460No description available.chr4-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD06G013150No description available.6-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME12794G00190No description available.scaffold12794-View
ME10899G00180No description available.scaffold10899+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT3G075210lysine-specific demethylase REF6-like protein C putativechr3-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G16570No description available.scaffold_5-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT12G09240No description available.Chr12+View
PT15G08900No description available.Chr15+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30147G04880No description available.30147-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G111590Zinc finger protein-like (AHRD V1 *--- Q9FYD7_ARATH)%3B contains Interpro domain(s) IPR013129 Transcription factor jumonjich03-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G023480Zinc finger protein-like (AHRD V1 *--- Q9FYD7_ARATH); contains Interpro domain(s) IPR013129 Transcription factor jumonjichr03+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G12450No description available.scaffold_3+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G13600similar to AT3G48430|REF6 (RELATIVE OF EARLY FLOWERING 6)ch5-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV17G00300name=GSVIVG01007564001;chr17+View


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Gene id
Species
Description
Chromosome
Strand