Anchorpoints

Gene id
AL5G16290
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL8G28860No description available.scaffold_8+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G62460RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G47550.6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). RING/FYVE/PHD zinc finger superfamily protein5+View
AT3G47550RING/FYVE/PHD zinc finger superfamily protein RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G62460.1); Has 1874 Blast hits to 1869 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 852; Fungi - 126; Plants - 623; Viruses - 31; Other Eukaryotes - 242 (source: NCBI BLink).3+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G38790No description available.A02+View
BR06G20230No description available.A06-View
BR06G28970No description available.A06+View
BR06G17790No description available.A06-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL04G12030No description available.Chr4+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00001G00740No description available.CM3.5_scaffold00001-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00111G00090No description available.supercontig_111-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G12790No description available.scaffold_5+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00015G01700No description available.scaffold00015-View
CS00111G00440No description available.scaffold00111+View
CS00003G04320No description available.scaffold00003-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0002G04320No description available.scaffold_2-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G05530E3 ubiquitin-protein ligase MARCH3 (MARCH-III) (probable)scf0513158+View
FV5G13260E3 ubiquitin-protein ligase MARCH9 (MARCH-IX) (probable)LG5+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM06G20860No description available.Gm06-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G19310No description available.Chr08-View
GR07G03750No description available.Chr07-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G003670No description available.9-View
MD13G004690No description available.13+View
MD14G019210No description available.14-View
MD16G003810No description available.16+View
MD17G004060No description available.17-View
MD06G015710No description available.6-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME11495G00240No description available.scaffold11495+View
ME08359G02330No description available.scaffold08359+View
ME12794G02190No description available.scaffold12794-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS09G24650zinc finger, C3HC4 type, putative, expressed9+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G19850No description available.scaffold_5-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G08630No description available.Chr08-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G116030E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- MARH3_MOUSE)%3B contains Interpro domain(s) IPR011016 Zinc finger%2C RING-CH-typech03+View
SL06G069780E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA)%3B contains Interpro domain(s) IPR011016 Zinc finger%2C RING-CH-typech06+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G029490E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- MARH3_MOUSE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-typechr03+View
ST06G026780E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-typechr06+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G09030No description available.scaffold_3-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G14330similar to AT3G47550|zinc finger (C3HC4-type RING finger) family proteinch5-1-View
TP2G25640similar to AT5G62460|zinc finger (C3HC4-type RING finger) family proteinch2-4+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV17G03680name=GSVIVG01008001001;chr17-View


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Gene id
Species
Description
Chromosome
Strand