Anchorpoints

Gene id
AL5G09080
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G39260expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin A21 (EXPA21); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A25 (TAIR:AT5G39300.1); Has 2253 Blast hits to 2250 proteins in 176 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 37; Plants - 2169; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). expansin A215-View
AT3G29030expansin A5 (EXPA5); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2184 Blast hits to 2181 proteins in 162 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 43; Plants - 2080; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin A53-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G31610No description available.A02-View
BR06G31670No description available.A06-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00014G01660No description available.supercontig_14-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G07500No description available.scaffold_5+View
CRU_007G35320No description available.scaffold_7+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00015G02460No description available.scaffold00015+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G42750Expansin-A22 (AtEXPA22), Precursor (similar to)LG6-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM08G26540No description available.Gm08+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR12G04930No description available.Chr12-View
GR13G09290No description available.Chr13+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G013120expansin A10chr7+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G23620No description available.scaffold_3-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT17G09270No description available.Chr17+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G115270Expansin (AHRD V1 ***- B7TYQ2_9GENT)%3B contains Interpro domain(s) IPR002963 Expansinch03-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G09730No description available.scaffold_4+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G02680similar to AT5G39310|ATEXPA24 (ARABIDOPSIS THALIANA EXPANSIN A24)ch7-1+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G13240name=GSVIVG01032935001;chr14-View


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Chromosome
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