Anchorpoints

Gene id
AL5G05430
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL1G13490No description available.scaffold_1+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G12860SCREAM 2 (SCRM2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to freezing, guard mother cell differentiation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G26744.4); Has 4150 Blast hits to 4134 proteins in 202 species: Archae - 0; Bacteria - 1; Metazoa - 48; Fungi - 52; Plants - 4003; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation. basic helix-loop-helix (bHLH) DNA-binding superfamily protein1+View
AT3G26744INDUCER OF CBF EXPRESSION 1 (ICE1); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G12860.1); Has 2623 Blast hits to 2616 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 30; Plants - 2572; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance. basic helix-loop-helix (bHLH) DNA-binding superfamily protein3-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00016G01270No description available.scaffold00016-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G33380No description available.A06+View
BR02G33120No description available.A02+View
BR08G27970No description available.A08-View
BR06G08210No description available.A06-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00070G00790No description available.supercontig_70-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_005G04360No description available.scaffold_5-View
CRU_001G12010No description available.scaffold_1+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00307G00010No description available.scaffold00307-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0007G14520No description available.scaffold_7-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM16G05390No description available.Gm16-View
GM19G27483No description available.Gm19+View
GM16G26291No description available.Gm16+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR01G27560No description available.Chr01+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME05432G00240No description available.scaffold05432+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G083900basic helix loop helix protein BHLH23chr7+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS01G70310inducer of CBF expression 2, putative, expressed1-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G15060No description available.scaffold_5-View
PPE_003G28930No description available.scaffold_3+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT12G10600No description available.Chr12+View
PT15G10520No description available.Chr15+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30131G01330No description available.30131-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G04620No description available.scaffold_4+View
TC0003G14080No description available.scaffold_3+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G11440similar to AT1G12860|SCRM2 (SCREAM 2)ch1-1+View
TP2G15870similar to AT3G26744|ICE1 (INDUCER OF CBF EXPRESSION 1)ch2-4-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV17G08940name=GSVIVG01008637001;chr17-View
VV14G13790name=GSVIVG01032998001;chr14-View


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Gene id
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Description
Chromosome
Strand