Anchorpoints

Gene id
AL4G26190
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL5G25610No description available.scaffold_5-View
AL6G01440No description available.scaffold_6+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G39700expansin A4 expansin A4 (EXPA4); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A16 (TAIR:AT3G55500.1); Has 2158 Blast hits to 2155 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 41; Plants - 2085; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.2-View
AT3G55500expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A16 (EXPA16); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2167 Blast hits to 2164 proteins in 159 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 38; Plants - 2087; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). expansin A163-View
AT2G28950Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A6 (EXPA6); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2139 Blast hits to 2136 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 24; Plants - 2081; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). expansin A62-View
AT5G02260expansin A9 member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin A9 (EXPA9); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: Barwin-like endoglucanases superfamily protein (TAIR:AT2G37640.1); Has 2170 Blast hits to 2166 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 2091; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).5+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00012G01840No description available.scaffold00012-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR04G03930No description available.A04+View
BR05G06140No description available.A05+View
BR10G28670No description available.A10-View
BR09G36380No description available.A09-View
BR04G23570No description available.A04-View
BR03G19900No description available.A03-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV2G05410No description available.Bvchr2.sca001-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL03G01470No description available.Chr3+View
CL09G20060No description available.Chr9+View
CL07G03430No description available.Chr7+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00048G01530No description available.CM3.5_scaffold00048+View
CM00063G00730No description available.CM3.5_scaffold00063-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00001G04090No description available.supercontig_1-View
CP00081G01390No description available.supercontig_81+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G21030No description available.scaffold_4-View
CRU_005G20900No description available.scaffold_5-View
CRU_006G01070No description available.scaffold_6+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00021G01840No description available.scaffold00021+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0007G23290No description available.scaffold_7-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV7G26090Expansin-A4 (AtEXPA4), Precursor (putative)LG7+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM11G34040No description available.Gm11-View
GM02G40790No description available.Gm02-View
GM18G04260No description available.Gm18+View
GM02G41590No description available.Gm02-View
GM13G41160No description available.Gm13-View
GM14G07360No description available.Gm14+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR12G10440No description available.Chr12-View
GR01G11110No description available.Chr01-View
GR11G26600No description available.Chr11-View
GR09G09880No description available.Chr09+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD01G012420No description available.1-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06916G00600No description available.scaffold06916+View
ME08265G02170No description available.scaffold08265-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G079950expansin A10chr5-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G07410No description available.scaffold_6+View
PPE_006G26410No description available.scaffold_6-View
PPE_002G22810No description available.scaffold_2-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G05710No description available.Chr08-View
PT10G20250No description available.Chr10+View
PT06G08610No description available.Chr06-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST10G024150Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminalchr10+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0010G03380No description available.scaffold_10r-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G06980similar to AT3G55500|ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)ch5-1+View
TP4G21950similar to AT2G39700|ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)ch4-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV13G05160name=GSVIVG01016525001;chr13-View


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Description
Chromosome
Strand