Anchorpoints
- Gene id
- AL4G24270
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G38080 | IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink). LAC4 appears to have laccase activity based on enzyme assays performed using lac4 mutants. These mutants also have reduced levels of lignin. LAC4 is expressed in vascular bundles and fibers and likely contributes to lignin biosynthesis, and hence cell wall biosynthesis, there. lac4/irx12 mutants have a mild irregular xylem phenotype. Laccase/Diphenol oxidase family protein | 2 | + | View |
AT5G58910 | laccase 16 laccase 16 (LAC16); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: apoplast; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Laccase (InterPro:IPR017761), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT2G38080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). putative laccase, a member of laccase family of genes (17 members in Arabidopsis). | 5 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR05G31280 | No description available. | A05 | + | View |
BR10G11740 | No description available. | A10 | - | View |
BR04G22770 | No description available. | A04 | + | View |
BR05G07280 | No description available. | A05 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL10G19770 | No description available. | Chr10 | + | View |
CL04G07190 | No description available. | Chr4 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00011G01060 | No description available. | CM3.5_scaffold00011 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00056G01000 | No description available. | supercontig_56 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_004G19440 | No description available. | scaffold_4 | + | View |
CRU_006G00660 | No description available. | scaffold_6 | - | View |
CRU_003G10130 | No description available. | scaffold_3 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0011G25220 | No description available. | scaffold_11 | - | View |
EG0007G24050 | No description available. | scaffold_7 | + | View |
EG0010G16780 | No description available. | scaffold_10 | - | View |
EG0002G22810 | No description available. | scaffold_2 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV6G11060 | Laccase-4, Precursor (putative) | LG6 | - | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM18G42520 | No description available. | Gm18 | + | View |
GM01G27710 | No description available. | Gm01 | + | View |
GM03G14450 | No description available. | Gm03 | - | View |
GM14G06760 | No description available. | Gm14 | - | View |
GM07G17646 | No description available. | Gm07 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR02G26150 | No description available. | Chr02 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME08265G02860 | No description available. | scaffold08265 | + | View |
ME06512G02710 | No description available. | scaffold06512 | - | View |
ME03651G00100 | No description available. | scaffold03651 | - | View |
ME03150G00510 | No description available. | scaffold03150 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_006G27850 | No description available. | scaffold_6 | + | View |
PPE_006G00620 | No description available. | scaffold_6 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT16G11200 | No description available. | Chr16 | + | View |
PT01G24870 | No description available. | Chr01 | + | View |
PT10G19310 | No description available. | Chr10 | - | View |
PT09G04250 | No description available. | Chr09 | + | View |
PT08G06400 | No description available. | Chr08 | + | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29751G00010 | No description available. | 29751 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL10G076830 | Laccase 1a (AHRD V1 ***- B9IG56_POPTR)%3B contains Interpro domain(s) IPR017761 Laccase | ch10 | - | View |
SL10G085090 | Laccase 1a (AHRD V1 **** B9IG56_POPTR)%3B contains Interpro domain(s) IPR017761 Laccase | ch10 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST10G023710 | Laccase 1a (AHRD V1 **** B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase | chr10 | - | View |
ST09G011640 | Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase | chr09 | - | View |
ST10G027700 | Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase | chr10 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0005G02100 | No description available. | scaffold_5 | - | View |
TC0010G02510 | No description available. | scaffold_10r | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP4G20400 | similar to AT2G38080|IRX12 (IRREGULAR XYLEM 12) | ch4-6 | + | View |
TP6G40550 | similar to AT5G01190|LAC10 (laccase 10) | ch6-6 | + | View |
TP6G20610 | similar to AT5G58910|LAC16 (laccase 16) | ch6-6 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV08G13250 | name=GSVIVG01034003001; | chr8 | + | View |
VV06G02270 | name=GSVIVG01024795001; | chr6 | + | View |