Anchorpoints

Gene id
AL4G24270
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL6G00950No description available.scaffold_6-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G38080IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink). LAC4 appears to have laccase activity based on enzyme assays performed using lac4 mutants. These mutants also have reduced levels of lignin. LAC4 is expressed in vascular bundles and fibers and likely contributes to lignin biosynthesis, and hence cell wall biosynthesis, there. lac4/irx12 mutants have a mild irregular xylem phenotype. Laccase/Diphenol oxidase family protein2+View
AT5G58910laccase 16 laccase 16 (LAC16); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: apoplast; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Laccase (InterPro:IPR017761), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT2G38080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). putative laccase, a member of laccase family of genes (17 members in Arabidopsis).5-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR05G31280No description available.A05+View
BR10G11740No description available.A10-View
BR04G22770No description available.A04+View
BR05G07280No description available.A05-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL10G19770No description available.Chr10+View
CL04G07190No description available.Chr4-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00011G01060No description available.CM3.5_scaffold00011-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00056G01000No description available.supercontig_56+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G19440No description available.scaffold_4+View
CRU_006G00660No description available.scaffold_6-View
CRU_003G10130No description available.scaffold_3-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0011G25220No description available.scaffold_11-View
EG0007G24050No description available.scaffold_7+View
EG0010G16780No description available.scaffold_10-View
EG0002G22810No description available.scaffold_2+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G11060Laccase-4, Precursor (putative)LG6-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM18G42520No description available.Gm18+View
GM01G27710No description available.Gm01+View
GM03G14450No description available.Gm03-View
GM14G06760No description available.Gm14-View
GM07G17646No description available.Gm07+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR02G26150No description available.Chr02+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME08265G02860No description available.scaffold08265+View
ME06512G02710No description available.scaffold06512-View
ME03651G00100No description available.scaffold03651-View
ME03150G00510No description available.scaffold03150-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_006G27850No description available.scaffold_6+View
PPE_006G00620No description available.scaffold_6-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT16G11200No description available.Chr16+View
PT01G24870No description available.Chr01+View
PT10G19310No description available.Chr10-View
PT09G04250No description available.Chr09+View
PT08G06400No description available.Chr08+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29751G00010No description available.29751+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G076830Laccase 1a (AHRD V1 ***- B9IG56_POPTR)%3B contains Interpro domain(s) IPR017761 Laccasech10-View
SL10G085090Laccase 1a (AHRD V1 **** B9IG56_POPTR)%3B contains Interpro domain(s) IPR017761 Laccasech10+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST10G023710Laccase 1a (AHRD V1 **** B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccasechr10-View
ST09G011640Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccasechr09-View
ST10G027700Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccasechr10-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0005G02100No description available.scaffold_5-View
TC0010G02510No description available.scaffold_10r-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G20400similar to AT2G38080|IRX12 (IRREGULAR XYLEM 12)ch4-6+View
TP6G40550similar to AT5G01190|LAC10 (laccase 10)ch6-6+View
TP6G20610similar to AT5G58910|LAC16 (laccase 16)ch6-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV08G13250name=GSVIVG01034003001;chr8+View
VV06G02270name=GSVIVG01024795001;chr6+View


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Gene id
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Description
Chromosome
Strand