Anchorpoints

Gene id
AL4G20880
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL1G33490No description available.scaffold_1+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G32230WWE protein-protein interaction domain protein family RADICAL-INDUCED CELL DEATH1 (RCD1); CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: similar to RCD one 1 (TAIR:AT2G35510.1); Has 179 Blast hits to 178 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.1+View
AT2G35510similar to RCD one 1 (SRO1); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: WWE protein-protein interaction domain protein family (TAIR:AT1G32230.3); Has 207 Blast hits to 202 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). Encodes a WWE domain-containing protein with 76% similarity to RCD1. The protein also contains a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. similar to RCD one 12-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR04G21010No description available.A04-View
BR05G09220No description available.A05+View
BR09G26670No description available.A09-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL10G00820No description available.Chr10-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00021G01310No description available.CM3.5_scaffold00021+View
CM01596G01500No description available.CM3.5_scaffold01596-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_004G16610No description available.scaffold_4-View
CRU_001G29130No description available.scaffold_1+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00212G00080No description available.scaffold00212+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0005G02080No description available.scaffold_5+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G22420No description available.Chr08+View
GR04G18240No description available.Chr04+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT03G09670No description available.Chr03+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30068G01410No description available.30068+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G005270Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ)%3B contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase%2C catalytic regionch08-View
SL08G076420Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ)%3B contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase%2C catalytic regionch08-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST08G021880Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic regionchr08+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G30460No description available.scaffold_3-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G27910similar to AT1G32230|RCD1 (RADICAL-INDUCED CELL DEATH1)ch1-1+View
TP4G17730similar to AT2G35510|SRO1 (SIMILAR TO RCD ONE 1)ch4-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV02G01830name=GSVIVG01013090001;chr2+View


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Description
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Strand