PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AL4G19300
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AL1G29910	No description available.	scaffold_1	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G34020	Calcium-binding EF-hand family protein Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G34030.1); Has 248 Blast hits to 226 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 23; Fungi - 2; Plants - 158; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).	2	-	View
AT1G29020	Calcium-binding EF-hand family protein Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root, callus; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G29025.1); Has 483 Blast hits to 315 proteins in 72 species: Archae - 8; Bacteria - 1; Metazoa - 61; Fungi - 5; Plants - 330; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).	1	-	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR03G16950	No description available.	A03	-	View
BR04G20280	No description available.	A04	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_001G26080	No description available.	scaffold_1	-	View
CRU_004G15160	No description available.	scaffold_4	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM12G35670	No description available.	Gm12	-	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME04851G00820	No description available.	scaffold04851	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_004G05400	No description available.	scaffold_4	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL03G006260	Sodium/calcium exchanger family protein (AHRD V1 -- D7KKF3_ARALY)%3B contains Interpro domain(s) IPR011992 EF-Hand type	ch03	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP4G16370	similar to AT2G34020\|calcium ion binding	ch4-6	-	View
TP1G24950	similar to AT1G29020\|calcium-binding EF hand family protein	ch1-1	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV10G01810	name=GSVIVG01021164001;	chr10	+	View