PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AL4G17290
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AL1G04810	No description available.	scaffold_1	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G32270	zinc transporter 3 precursor (ZIP3); FUNCTIONS IN: zinc ion transmembrane transporter activity; INVOLVED IN: zinc ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 5 precursor (TAIR:AT1G05300.1); Has 2134 Blast hits to 1919 proteins in 341 species: Archae - 2; Bacteria - 237; Metazoa - 455; Fungi - 672; Plants - 540; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink). A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency. zinc transporter 3 precursor	2	+	View
AT1G05300	zinc transporter 5 precursor member of Fe(II) transporter isolog family zinc transporter 5 precursor (ZIP5); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 3 precursor (TAIR:AT2G32270.1); Has 1970 Blast hits to 1847 proteins in 292 species: Archae - 0; Bacteria - 139; Metazoa - 489; Fungi - 625; Plants - 507; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).	1	-	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR05G11640	No description available.	A05	+	View
BR04G19140	No description available.	A04	+	View
BR10G02360	No description available.	A10	+	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL11G10860	No description available.	Chr11	+	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00092G00280	No description available.	CM3.5_scaffold00092	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_001G04280	No description available.	scaffold_1	-	View
CRU_004G13200	No description available.	scaffold_4	+	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00036G01350	No description available.	scaffold00036	+	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0001G07230	No description available.	scaffold_1	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM13G10780	No description available.	Gm13	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_003G16750	No description available.	scaffold_3	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL07G043200	Zinc transporter protein (AHRD V1 **** D5LMF9_9FABA)%3B contains Interpro domain(s) IPR004698 Zinc/iron permease%2C fungal and plant	ch07	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0001G16840	No description available.	scaffold_1	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP4G14660	similar to AT2G32270\|ZIP3	ch4-6	+	View
TP1G04160	similar to AT1G05300\|ZIP5	ch1-1	-	View