Anchorpoints

Gene id
AL3G22880
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL1G45840No description available.scaffold_1+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G20840Integrase-type DNA-binding superfamily protein PLETHORA 1 (PLT1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G51190.1); Has 7378 Blast hits to 5365 proteins in 273 species: Archae - 0; Bacteria - 8; Metazoa - 48; Fungi - 6; Plants - 7088; Viruses - 2; Other Eukaryotes - 226 (source: NCBI BLink). Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.3+View
AT1G51190Integrase-type DNA-binding superfamily protein Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. PLETHORA 2 (PLT2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G20840.1); Has 7787 Blast hits to 5250 proteins in 253 species: Archae - 0; Bacteria - 8; Metazoa - 4; Fungi - 0; Plants - 7694; Viruses - 2; Other Eukaryotes - 79 (source: NCBI BLink).1+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR06G02500No description available.A06-View
BR01G29760No description available.A01-View
BR05G17940No description available.A05-View
BR05G22750No description available.A05-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL02G23350No description available.Chr2+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00022G04380No description available.CM3.5_scaffold00022+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00084G00810No description available.supercontig_84-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G38190No description available.scaffold_1+View
CRU_003G19860No description available.scaffold_3+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM12G06010No description available.Gm12+View
GM11G14040No description available.Gm11+View
GM13G40470No description available.Gm13-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR01G14000No description available.Chr01-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04681G00270No description available.scaffold04681+View
ME10963G00570No description available.scaffold10963-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G01840No description available.Chr01+View
PT03G20570No description available.Chr03-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL11G061750AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch11+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST11G016490AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-bindingchr11-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0009G22440No description available.scaffold_9-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G18860similar to AT3G20840|PLT1 (PLETHORA 1)ch3-1+View
TP1G37920similar to AT1G51190|PLT2 (PLETHORA 2)ch1-2+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G06350name=GSVIVG01025307001;chr6-View


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Gene id
Species
Description
Chromosome
Strand