PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AL3G16980
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AL2G29800	No description available.	scaffold_2	-	View
AL1G47340	No description available.	scaffold_1	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G15980	Coatomer, beta' subunit Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, beta' subunit (InterPro:IPR016453), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1).	3	-	View
AT1G52360	Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3). Coatomer, beta' subunit	1	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR01G32920	No description available.	A01	+	View
BR03G34610	No description available.	A03	-	View
BR05G17310	No description available.	A05	-	View

Beta vulgaris

Gene id	Description	Chromosome	Strand	Multiplicon
BV9G16540	No description available.	Bvchr9.sca026	-	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL09G01900	No description available.	Chr9	+	View
CL07G13190	No description available.	Chr7	+	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00067G00040	No description available.	CM3.5_scaffold00067	-	View
CM00018G01840	No description available.	CM3.5_scaffold00018	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_003G14950	No description available.	scaffold_3	-	View
CRU_001G39430	No description available.	scaffold_1	+	View
CRU_002G26070	No description available.	scaffold_2	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0006G25260	No description available.	scaffold_6	-	View
EG0010G25530	No description available.	scaffold_10	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM08G22140	No description available.	Gm08	+	View
GM15G01680	No description available.	Gm15	-	View
GM13G43680	No description available.	Gm13	-	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR09G13280	No description available.	Chr09	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD17G015640	No description available.	17	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT2G102267	coatomer subunit beta-like protein	chr2	+	View
MT4G011950	coatomer subunit beta-like protein	chr4	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_003G05820	No description available.	scaffold_3	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT01G17920	No description available.	Chr01	-	View
PT03G05630	No description available.	Chr03	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL06G066730	Coatomer beta%26apos subunit (AHRD V1 ***- Q0CXS2_ASPTN)%3B contains Interpro domain(s) IPR016453 Coatomer%2C beta' subunit	ch06	+	View
SL12G043000	Coatomer beta%26apos subunit (AHRD V1 ***- Q0CXS2_ASPTN)%3B contains Interpro domain(s) IPR016453 Coatomer%2C beta' subunit	ch12	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST06G023220	Coatomer subunit beta&apos (AHRD V1 **-- E2C5N9_9HYME); contains Interpro domain(s) IPR016453 Coatomer, beta' subunit	chr06	+	View
ST12G021850	Coatomer subunit beta&apos (AHRD V1 **-- E2C5N9_9HYME); contains Interpro domain(s) IPR016453 Coatomer, beta' subunit	chr12	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP3G14330	similar to AT3G15980\|coatomer protein complex, subunit beta 2 (beta prime), putative	ch3-1	-	View
TP1G38970	similar to AT1G52360\|coatomer protein complex, subunit beta 2 (beta prime), putative	ch1-2	+	View